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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:13605.6 nTPM
GTEx:13605.6 nTPM
FANTOM5:417.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004193Antibody CAB009441Antibody CAB080262
Squamous epithelial cells HighHighMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13605.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 13605.6
Samples: 156

Max nTPM: 58260.5
Min nTPM: 12.8
Std nTPM: 14089.8
Median nTPM: 10445.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 58260.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 55179.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 52080.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 50242.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 49313.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 43776.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 43452.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 42611.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 40741.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 37670.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 37533.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 36774.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 35028.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 34235.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 34199.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 33873.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 32798.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 32596.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 32482.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 32273.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 30015.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 29186.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 28909.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 28263.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 28065.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 27999.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 27939.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 27848.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 26425.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 26252.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 26048.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 26024.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 25397.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 25269.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 23916.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 23871.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 23780.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 23364.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 23218.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 22881.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 22848.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 22105.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 21859.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 21298.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 21252.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 21018.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 20742.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 20693.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 19894.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 19625.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 18776.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 18289.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 18157.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 17786.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 17230.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 17053.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 16845.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 16367.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 16020.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 15890.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 14671.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 14136.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 14087.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 13891.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 13674.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 13278.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 12980.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 12731.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 12727.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 12618.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 12586.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 12433.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 12324.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 12128.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 11153.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 11119.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 10993.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 10588.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 10302.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 10249.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 9581.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 9458.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 8949.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 8466.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 8182.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 8136.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 7293.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 6951.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 6596.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 5780.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 5588.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 5465.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 5116.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4878.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4777.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 4590.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 4564.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 3853.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 3838.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 3257.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2088.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1812.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1630.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1499.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1429.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1428.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1425.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1231.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1084.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1074.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 954.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 861.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 811.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 674.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 632.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 627.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 450.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 402.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 309.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 287.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 252.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 247.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 232.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 225.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 219.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 215.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 213.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 202.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 201.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 184.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 167.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 148.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 129.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 127.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 123.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 114.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 108.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 98.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 96.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 95.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 90.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 87.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 73.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 69.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 64.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 63.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 54.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 51.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 46.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 37.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 34.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 30.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 29.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 25.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 18.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 12.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

417.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 417.1
FF:10204-103F6 68 years, female 417.1

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