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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:165.2 nTPM
HPA Brain:80.8 nTPM
GTEx:165.2 nTPM
FANTOM5:148.9 Scaled Tags Per Million
Pig:88.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 78.4
1981 Female, age 72, midline 100.7
2565 Male, age 75, midline 79.7
2816 Male, age 47, midline 77.5
2048 Male, age 55, midline 68.9
2194 Female, age 79, both hemispheres 65.2
Cervical spinal cord, dorsal horn
nTPM: 80.8
2296 Male, age 66, both hemispheres 102.7
2173 Female, age 72, unknown 101.9
2069 Male, age 47, both hemispheres 76.8
1877 Male, age 55, unknown 70.5
2721 Male, age 90, both hemispheres 69.9
2297 Male, age 75, both hemispheres 63.2
Cervical spinal cord, ventral horn
nTPM: 78.2
2098 Female, age 72, unknown 112.1
2809 Male, age 90, both hemispheres 88.9
2480 Male, age 75, both hemispheres 72.1
2068 Male, age 55, unknown 71.0
2820 Female, age 79, both hemispheres 65.9
2295 Male, age 66, both hemispheres 59.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 165.2
Samples: 159

Max nTPM: 269.7
Min nTPM: 76.3
Std nTPM: 38.9
Median nTPM: 159.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 269.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 264.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 255.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 250.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 247.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 247.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 247.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 244.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 239.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 237.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 237.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 232.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 228.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 227.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 224.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 224.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 219.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 217.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 214.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 213.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 211.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 209.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 204.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 203.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 203.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 202.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 201.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 200.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 199.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 196.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 196.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 196.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 193.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 192.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 192.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 190.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 189.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 187.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 186.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 185.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 184.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 183.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 183.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 181.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 181.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 181.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 180.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 180.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 180.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 179.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 179.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 177.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 176.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 176.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 176.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 175.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 175.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 174.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 174.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 173.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 173.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 172.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 169.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 169.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 169.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 168.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 167.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 167.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 167.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 166.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 165.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 165.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 163.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 163.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 159.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 159.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 158.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 158.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 158.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 157.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 157.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 156.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 156.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 156.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 156.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 155.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 155.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 155.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 154.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 154.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 154.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 153.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 151.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 151.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 150.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 149.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 148.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 148.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 148.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 147.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 147.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 145.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 145.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 145.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 145.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 144.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 143.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 143.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 142.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 142.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 141.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 140.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 139.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 138.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 138.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 136.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 136.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 135.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 135.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 131.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 131.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 130.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 130.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 129.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 128.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 128.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 128.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 126.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 123.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 123.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 118.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 117.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 116.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 116.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 113.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 112.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 107.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 107.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 106.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 104.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 102.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 96.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 96.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 89.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 85.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 76.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

148.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 148.9
FF:10181-103D1 60 years, female 175.0
FF:10159-103A6 76 years, female 122.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 88.7
Samples: 4

Max nTPM: 112.9
Min nTPM: 67.8
Sample A Female 67.8
Sample B Female 89.4
Sample C Male 112.9
Sample D Male 84.7
Ventral spinal cord
nTPM: 84.6
Samples: 4

Max nTPM: 99.9
Min nTPM: 72.1
Sample A Female 72.1
Sample B Female 81.7
Sample C Male 99.9
Sample D Male 84.8

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