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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:142.8 nTPM
HPA:94.1 nTPM
GTEx:142.8 nTPM
FANTOM5:240.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.1
overview
Male, age 65
Small intestine sample 232
nTPM: 100.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 103
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 83.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 89

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 142.8
Samples: 187

Max nTPM: 272.6
Min nTPM: 75.9
Std nTPM: 30.4
Median nTPM: 140.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 272.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 244.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 232.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 227.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 221.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 216.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 208.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 207.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 205.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 198.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 198.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 194.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 191.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 188.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 187.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 185.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 183.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 183.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 182.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 182.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 176.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 174.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 171.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 171.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 170.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 170.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 168.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 167.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 167.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 166.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 166.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 166.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 165.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 164.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 164.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 163.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 162.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 162.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 161.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 161.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 161.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 161.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 159.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 159.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 159.3
GTEX-1192X-2526-SM-59868 50-59 years, male 158.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 158.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 158.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 157.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 157.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 156.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 156.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 155.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 154.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 153.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 153.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 153.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 153.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 152.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 151.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 150.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 150.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 149.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 149.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 149.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 149.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 149.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 149.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 148.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 148.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 148.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 147.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 147.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 147.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 147.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 146.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 146.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 146.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 146.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 145.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 145.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 145.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 145.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 145.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 145.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 144.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 144.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 144.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 144.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 142.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 141.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 141.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 141.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 140.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 140.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 140.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 140.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 139.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 139.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 138.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 136.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 136.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 136.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 136.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 135.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 135.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 134.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 134.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 134.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 134.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 133.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 132.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 132.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 132.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 131.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 131.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 130.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 129.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 129.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 128.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 128.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 128.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 127.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 127.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 127.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 126.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 125.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 125.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 125.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 125.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 124.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 124.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 124.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 124.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 123.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 123.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 123.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 123.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 123.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 121.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 121.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 121.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 121.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 121.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 120.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 119.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 119.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 119.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 119.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 119.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 118.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 117.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 115.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 114.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 113.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 113.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 113.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 113.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 112.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 112.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 112.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 112.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 112.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 111.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 111.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 109.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 109.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 108.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 107.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 107.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 107.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 107.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 105.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 105.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 104.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 103.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 102.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 102.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 101.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 98.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 95.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 93.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 92.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 89.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 82.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 75.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 240.9
FF:10024-101D6 15,40,85 years, mixed 240.9

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