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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:154.3 nTPM
HPA:137.0 nTPM
GTEx:154.3 nTPM
FANTOM5:215.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.0
overview
Male, age 65
Small intestine sample 232
nTPM: 133.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 147.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 131.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 135.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 154.3
Samples: 187

Max nTPM: 261.7
Min nTPM: 100.3
Std nTPM: 29.5
Median nTPM: 149.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 261.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 240.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 239.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 238.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 238.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 233.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 225.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 224.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 214.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 211.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 207.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 207.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 206.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 206.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 200.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 200.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 200.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 198.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 197.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 194.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 194.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 192.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 192.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 189.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 188.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 187.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 181.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 180.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 179.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 179.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 178.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 177.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 175.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 172.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 172.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 172.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 171.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 171.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 170.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 170.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 170.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 169.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 169.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 169.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 168.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 168.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 167.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 167.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 167.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 167.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 165.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 164.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 164.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 163.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 163.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 162.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 162.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 162.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 161.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 160.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 160.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 160.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 159.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 159.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 159.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 158.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 158.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 157.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 157.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 156.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 156.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 156.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 155.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 155.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 155.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 154.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 154.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 154.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 154.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 154.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 154.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 153.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 153.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 152.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 152.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 152.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 151.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 151.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 150.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 150.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 150.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 149.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 149.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 149.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 149.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 149.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 148.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 148.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 148.1
GTEX-1192X-2526-SM-59868 50-59 years, male 147.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 147.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 146.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 146.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 146.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 146.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 146.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 146.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 145.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 145.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 145.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 145.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 144.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 144.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 144.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 143.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 143.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 142.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 142.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 142.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 142.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 142.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 141.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 141.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 141.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 141.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 140.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 140.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 140.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 139.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 139.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 138.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 138.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 138.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 138.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 137.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 137.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 136.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 135.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 135.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 135.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 135.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 135.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 135.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 134.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 134.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 134.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 134.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 134.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 133.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 132.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 132.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 131.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 130.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 129.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 129.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 128.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 128.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 128.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 128.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 127.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 127.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 127.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 126.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 125.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 124.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 123.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 123.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 122.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 122.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 119.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 119.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 118.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 117.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 116.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 115.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 115.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 114.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 111.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 109.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 107.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 106.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 106.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 105.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 105.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 104.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 103.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 100.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 215.7
FF:10024-101D6 15,40,85 years, mixed 215.7

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