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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:225.6 nTPM
HPA Brain:124.2 nTPM
GTEx:225.6 nTPM
FANTOM5:118.7 Scaled Tags Per Million
Pig:23.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 75.1
1981 Female, age 72, midline 85.9
2816 Male, age 47, midline 83.0
2194 Female, age 79, both hemispheres 71.7
2048 Male, age 55, midline 68.2
2565 Male, age 75, midline 66.8
Cervical spinal cord, dorsal horn
nTPM: 124.2
2296 Male, age 66, both hemispheres 265.9
2069 Male, age 47, both hemispheres 139.4
2173 Female, age 72, unknown 104.9
1877 Male, age 55, unknown 95.9
2297 Male, age 75, both hemispheres 78.0
2721 Male, age 90, both hemispheres 61.1
Cervical spinal cord, ventral horn
nTPM: 81.7
2480 Male, age 75, both hemispheres 133.7
2098 Female, age 72, unknown 77.0
2068 Male, age 55, unknown 75.0
2820 Female, age 79, both hemispheres 71.6
2809 Male, age 90, both hemispheres 67.6
2295 Male, age 66, both hemispheres 65.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 225.6
Samples: 159

Max nTPM: 595.7
Min nTPM: 47.3
Std nTPM: 87.9
Median nTPM: 217.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 595.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 430.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 418.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 407.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 404.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 400.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 399.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 394.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 394.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 392.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 390.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 373.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 372.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 349.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 346.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 344.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 335.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 331.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 328.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 328.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 323.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 323.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 319.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 316.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 312.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 310.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 304.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 304.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 304.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 300.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 299.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 299.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 295.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 293.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 288.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 287.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 284.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 282.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 280.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 279.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 275.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 272.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 268.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 266.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 264.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 263.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 262.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 260.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 260.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 259.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 258.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 255.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 254.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 252.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 252.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 249.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 249.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 247.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 247.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 246.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 244.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 244.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 241.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 241.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 241.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 241.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 239.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 239.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 237.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 235.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 229.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 229.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 227.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 227.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 226.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 221.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 220.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 218.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 218.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 217.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 217.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 214.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 213.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 213.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 213.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 212.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 211.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 209.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 204.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 204.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 204.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 199.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 196.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 195.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 191.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 189.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 185.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 184.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 183.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 181.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 179.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 177.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 177.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 177.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 177.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 177.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 177.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 176.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 174.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 174.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 174.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 173.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 168.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 163.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 163.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 162.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 159.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 158.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 154.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 153.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 152.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 152.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 151.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 151.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 149.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 149.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 149.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 148.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 145.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 144.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 140.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 138.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 137.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 134.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 132.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 131.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 131.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 131.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 131.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 127.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 125.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 121.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 121.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 118.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 118.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 117.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 115.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 110.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 102.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 99.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 92.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 91.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 87.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 70.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 66.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 47.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 118.7
FF:10159-103A6 76 years, female 141.8
FF:10181-103D1 60 years, female 95.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.6
Samples: 4

Max nTPM: 35.5
Min nTPM: 10.5
Sample A Female 35.5
Sample B Female 22.0
Sample C Male 10.5
Sample D Male 26.3
Ventral spinal cord
nTPM: 17.9
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.4
Sample A Female 18.6
Sample B Female 19.2
Sample C Male 14.4
Sample D Male 19.2

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