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SLC6A20
HPA
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  • SLC6A20
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC6A20
Synonyms IMINO, SIT1, XT3, Xtrp3
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 6 member 20
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband p21.31
Chromosome location (bp) 45755449 - 45796574
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000163817 (version 109)
Entrez gene 54716
HGNC HGNC:30927
UniProt Q9NP91 (UniProt - Evidence at protein level)
neXtProt NX_Q9NP91
GeneCards SLC6A20
Antibodypedia SLC6A20 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates the Na(+)- and Cl(-)-dependent uptake of imino acids such as L-proline, N-methyl-L-proline and pipecolate as well as N-methylated amino acids 1, 2, 3. Also transports glycine, regulates proline and glycine homeostasis in the brain playing a role in the modulation of NMDAR currents 4.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Amino-acid transport, Symport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Transport of small hydrophilic substances across cell membranes is mediated by substrate-specific transporter proteins which have been classified into several families of related genes. The protein encoded by this gene belongs to the sodium:neurotransmitter symporter (SNF) family and functions as a proline transporter expressed in kidney and small intestine. Mutations in this gene are associated with Hyperglycinuria and Iminoglycinuria. [provided by RefSeq, Jul 2020]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC6A20-201
ENSP00000296133
ENST00000353278
Q9NP91
[Direct mapping] Sodium- and chloride-dependent transporter XTRP3
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005298 [proline:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006865 [amino acid transport]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015188 [L-isoleucine transmembrane transporter activity]
GO:0015193 [L-proline transmembrane transporter activity]
GO:0015199 [amino-acid betaine transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015370 [solute:sodium symporter activity]
GO:0015816 [glycine transport]
GO:0015824 [proline transport]
GO:0015838 [amino-acid betaine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
GO:0089718 [amino acid import across plasma membrane]
GO:0150104 [transport across blood-brain barrier]
GO:1903804 [glycine import across plasma membrane]
GO:1903806 [L-isoleucine import across plasma membrane]
GO:1904271 [L-proline import across plasma membrane]
GO:1905647 [proline import across plasma membrane]
Show all
555 aa
61.8 kDa
No >9
SLC6A20-202
ENSP00000346298
ENST00000358525
Q9NP91
[Direct mapping] Sodium- and chloride-dependent transporter XTRP3
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005298 [proline:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006865 [amino acid transport]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015188 [L-isoleucine transmembrane transporter activity]
GO:0015193 [L-proline transmembrane transporter activity]
GO:0015199 [amino-acid betaine transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015370 [solute:sodium symporter activity]
GO:0015816 [glycine transport]
GO:0015824 [proline transport]
GO:0015838 [amino-acid betaine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
GO:0089718 [amino acid import across plasma membrane]
GO:0150104 [transport across blood-brain barrier]
GO:1903804 [glycine import across plasma membrane]
GO:1903806 [L-isoleucine import across plasma membrane]
GO:1904271 [L-proline import across plasma membrane]
GO:1905647 [proline import across plasma membrane]
Show all
592 aa
65.9 kDa
No >9
SLC6A20-207
ENSP00000515266
ENST00000703343
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
   Urinary system diseases
   Kidney diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005887 [integral component of plasma membrane]
GO:0016021 [integral component of membrane]
Show all
603 aa
67 kDa
No >9

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