MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA Brain:42.5 nTPM
GTEx:42.1 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Pig:72.0 nTPM
Mouse:55.7 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
1827 Male, age 72, unknown 34.3
1870 Female, age 42, unknown 31.2
2411 Female, age 72, unknown 30.1
2666 Male, age 74, left hemisphere 26.8
2586 Male, age 75, left hemisphere 26.3
2219 Male, age 76, both hemispheres 25.7
1833 Male, age 53, unknown 25.1
1830 Male, age 51, unknown 24.1
2019 Male, age 18, unknown 20.5
2828 Female, age 72, unknown 20.3
Dorsal raphe nucleus
nTPM: 31.2
2298 Female, age 72, unknown 45.9
2047 Male, age 72, unknown 31.3
1828 Male, age 53, unknown 29.9
2750 Male, age 76, both hemispheres 27.5
2016 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 27.8
2097 Female, age 72, unknown 33.4
1848 Female, age 42, unknown 28.6
2849 Male, age 72, unknown 25.4
1890 Male, age 53, unknown 23.9
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Periaquaductal grey, anterior
nTPM: 31.5
1947 Male, age 18, unknown 34.0
1795 Male, age 51, unknown 33.9
2502 Female, age 75, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 31.0
2850 Male, age 76, both hemispheres 35.1
1840 Male, age 53, unknown 34.7
1831 Male, age 72, unknown 28.0
2464 Female, age 72, unknown 26.2
Periaquaductal grey, lateral
nTPM: 27.9
2272 Male, age 74, both hemispheres 30.4
2053 Male, age 18, unknown 27.6
2140 Male, age 76, both hemispheres 25.6
Pretectal area
nTPM: 30.6
2224 Female, age 72, unknown 36.1
1816 Male, age 51, unknown 36.0
2273 Male, age 74, both hemispheres 33.7
1944 Female, age 72, unknown 33.6
2825 Male, age 18, unknown 31.8
2407 Male, age 75, both hemispheres 29.8
1817 Female, age 42, unknown 29.0
2007 Male, age 72, unknown 29.0
1815 Male, age 53, unknown 28.8
2667 Female, age 75, unknown 27.7
2316 Male, age 76, right hemisphere 21.6
Red nucleus
nTPM: 22.3
2725 Female, age 75, unknown 29.9
1821 Female, age 72, unknown 28.9
2588 Male, age 74, left hemisphere 24.1
2584 Male, age 75, left hemisphere 23.1
2769 Male, age 72, unknown 22.4
2823 Male, age 76, right hemisphere 21.3
1954 Female, age 42, unknown 21.0
2785 Male, age 18, unknown 20.9
2227 Male, age 72, unknown 20.0
2503 Female, age 72, unknown 19.8
1904 Male, age 53, unknown 19.5
1865 Male, age 51, unknown 17.3
Substantia nigra
nTPM: 32.9
2241 Male, age 72, unknown 45.3
1916 Female, age 42, unknown 40.7
1941 Male, age 53, unknown 39.0
1889 Female, age 72, unknown 35.8
1851 Male, age 51, unknown 35.0
2699 Male, age 18, unknown 30.4
2409 Female, age 72, unknown 29.8
2590 Female, age 75, unknown 28.3
2665 Male, age 74, both hemispheres 23.7
2583 Male, age 75, right hemisphere 21.2
Superior colliculus
nTPM: 26.6
2261 Male, age 18, unknown 33.1
1796 Male, age 53, unknown 32.8
2668 Female, age 75, unknown 28.4
2087 Female, age 72, unknown 27.1
1839 Male, age 51, unknown 27.0
2587 Male, age 74, left hemisphere 26.5
1895 Male, age 76, right hemisphere 25.9
2664 Male, age 75, both hemispheres 25.0
1913 Female, age 42, unknown 21.8
1995 Male, age 72, unknown 18.5
Ventral tegmental area
nTPM: 29.5
1915 Female, age 42, unknown 35.3
2218 Male, age 76, both hemispheres 35.0
2410 Female, age 72, unknown 28.1
1942 Male, age 51, unknown 28.0
2223 Female, age 72, unknown 26.1
2021 Male, age 53, unknown 24.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.1
Samples: 139

Max nTPM: 89.1
Min nTPM: 17.2
Std nTPM: 13.3
Median nTPM: 40.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 79.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 78.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 77.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 70.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 70.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 66.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 65.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 64.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 64.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.0
FF:10158-103A5 76 years, female 70.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 72.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.9
Samples: 4

Max nTPM: 84.2
Min nTPM: 51.1
Sample A Female 84.2
Sample B Female 59.6
Sample C Male 76.5
Sample D Male 51.1
Midbrain
nTPM: 71.6
Samples: 4

Max nTPM: 82.3
Min nTPM: 66.5
Sample A Female 68.1
Sample B Female 66.5
Sample C Male 69.5
Sample D Male 82.3
Periaqueductal gray
nTPM: 72.0
Samples: 3

Max nTPM: 81.5
Min nTPM: 67.1
Sample B Female 67.5
Sample C Male 81.5
Sample D Male 67.1
Superior colliculi
nTPM: 68.9
Samples: 4

Max nTPM: 83.8
Min nTPM: 55.8
Sample A Female 83.8
Sample B Female 55.8
Sample C Male 66.3
Sample D Male 69.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.7
Samples: 4

Max nTPM: 56.7
Min nTPM: 55.1
Sample A Male 55.6
Sample B Male 55.1
Sample C Female 56.7
Sample D Female 55.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
71991768 Antisense, RP_051012_03_D09, Mouse strain C57BL/6J (56 days, male) 6.1

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