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RHO
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RHO
Synonyms CSNBAD1, OPN2, RP4
Gene descriptioni

Full gene name according to HGNC.

Rhodopsin
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
G-protein coupled receptors
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband q22.1
Chromosome location (bp) 129528639 - 129535344
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

1
Ensembl ENSG00000163914 (version 109)
Entrez gene 6010
HGNC HGNC:10012
UniProt P08100 (UniProt - Evidence at protein level)
neXtProt NX_P08100
GeneCards RHO
Antibodypedia RHO antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Photoreceptor required for image-forming vision at low light intensity 1, 2. Required for photoreceptor cell viability after birth 3, 4. Light-induced isomerization of the chromophore 11-cis-retinal to all-trans-retinal triggers a conformational change that activates signaling via G-proteins 5, 6, 7, 8. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by the arrestin SAG and terminates signaling 9, 10.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

G-protein coupled receptor, Photoreceptor protein, Receptor, Retinal protein, Transducer
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Sensory transduction, Vision
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Chromophore, Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is found in rod cells in the back of the eye and is essential for vision in low-light conditions. The encoded protein binds to 11-cis retinal and is activated when light hits the retinal molecule. Defects in this gene are a cause of congenital stationary night blindness. [provided by RefSeq, Aug 2017]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RHO-201
ENSP00000296271
ENST00000296271
P08100
[Direct mapping] Rhodopsin
Show all
Transporters
G-protein coupled receptors
   GPCRs excl olfactory receptors
   Opsins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001750 [photoreceptor outer segment]
GO:0001917 [photoreceptor inner segment]
GO:0004930 [G protein-coupled receptor activity]
GO:0005502 [11-cis retinal binding]
GO:0005515 [protein binding]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0006468 [protein phosphorylation]
GO:0007165 [signal transduction]
GO:0007186 [G protein-coupled receptor signaling pathway]
GO:0007601 [visual perception]
GO:0007602 [phototransduction]
GO:0007603 [phototransduction, visible light]
GO:0008020 [G protein-coupled photoreceptor activity]
GO:0009416 [response to light stimulus]
GO:0009583 [detection of light stimulus]
GO:0009881 [photoreceptor activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016038 [absorption of visible light]
GO:0016056 [rhodopsin mediated signaling pathway]
GO:0030660 [Golgi-associated vesicle membrane]
GO:0042622 [photoreceptor outer segment membrane]
GO:0042995 [cell projection]
GO:0043052 [thermotaxis]
GO:0045494 [photoreceptor cell maintenance]
GO:0046872 [metal ion binding]
GO:0050896 [response to stimulus]
GO:0050953 [sensory perception of light stimulus]
GO:0050960 [detection of temperature stimulus involved in thermoception]
GO:0060041 [retina development in camera-type eye]
GO:0060170 [ciliary membrane]
GO:0060342 [photoreceptor inner segment membrane]
GO:0071482 [cellular response to light stimulus]
GO:0097225 [sperm midpiece]
GO:0097381 [photoreceptor disc membrane]
GO:0120200 [rod photoreceptor outer segment]
GO:1990913 [sperm head plasma membrane]
Show all
348 aa
38.9 kDa
No 7

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