MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.9 nTPM
HPA Brain:42.5 nTPM
GTEx:1.9 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:6.9 nTPM
Mouse:2.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.3
1830 Male, age 51, unknown 41.6
2019 Male, age 18, unknown 39.7
1833 Male, age 53, unknown 37.4
1870 Female, age 42, unknown 34.3
2666 Male, age 74, left hemisphere 33.5
2411 Female, age 72, unknown 26.7
2828 Female, age 72, unknown 24.8
2586 Male, age 75, left hemisphere 23.2
1827 Male, age 72, unknown 22.7
2219 Male, age 76, both hemispheres 18.7
Dorsal raphe nucleus
nTPM: 22.8
2016 Female, age 72, unknown 27.7
2750 Male, age 76, both hemispheres 27.1
1828 Male, age 53, unknown 24.7
2298 Female, age 72, unknown 18.7
2047 Male, age 72, unknown 16.0
Inferior colliculus
nTPM: 22.8
2849 Male, age 72, unknown 26.7
1890 Male, age 53, unknown 23.9
1848 Female, age 42, unknown 23.7
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Periaquaductal grey, anterior
nTPM: 18.3
1947 Male, age 18, unknown 20.8
1795 Male, age 51, unknown 17.4
2502 Female, age 75, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 32.3
2850 Male, age 76, both hemispheres 71.0
2464 Female, age 72, unknown 22.5
1831 Male, age 72, unknown 21.2
1840 Male, age 53, unknown 14.6
Periaquaductal grey, lateral
nTPM: 32.5
2140 Male, age 76, both hemispheres 56.0
2272 Male, age 74, both hemispheres 21.3
2053 Male, age 18, unknown 20.1
Pretectal area
nTPM: 18.5
1815 Male, age 53, unknown 28.7
1817 Female, age 42, unknown 23.8
2825 Male, age 18, unknown 21.7
2007 Male, age 72, unknown 21.6
2224 Female, age 72, unknown 20.4
2407 Male, age 75, both hemispheres 19.8
2273 Male, age 74, both hemispheres 16.9
2316 Male, age 76, right hemisphere 16.3
1816 Male, age 51, unknown 12.0
1944 Female, age 72, unknown 11.6
2667 Female, age 75, unknown 10.9
Red nucleus
nTPM: 42.5
1904 Male, age 53, unknown 49.9
2503 Female, age 72, unknown 48.4
2769 Male, age 72, unknown 46.4
1865 Male, age 51, unknown 45.6
1821 Female, age 72, unknown 45.5
2227 Male, age 72, unknown 43.0
2785 Male, age 18, unknown 41.1
1954 Female, age 42, unknown 40.6
2823 Male, age 76, right hemisphere 40.4
2588 Male, age 74, left hemisphere 40.1
2725 Female, age 75, unknown 39.5
2584 Male, age 75, left hemisphere 30.2
Substantia nigra
nTPM: 24.0
2590 Female, age 75, unknown 30.6
2409 Female, age 72, unknown 29.3
2241 Male, age 72, unknown 25.9
2665 Male, age 74, both hemispheres 25.6
1889 Female, age 72, unknown 24.4
2583 Male, age 75, right hemisphere 23.8
1851 Male, age 51, unknown 23.5
2699 Male, age 18, unknown 21.7
1941 Male, age 53, unknown 20.5
1916 Female, age 42, unknown 14.4
Superior colliculus
nTPM: 24.1
2668 Female, age 75, unknown 33.4
1995 Male, age 72, unknown 29.6
2587 Male, age 74, left hemisphere 29.6
1913 Female, age 42, unknown 28.6
1839 Male, age 51, unknown 28.2
1895 Male, age 76, right hemisphere 22.6
2261 Male, age 18, unknown 19.8
1796 Male, age 53, unknown 17.8
2664 Male, age 75, both hemispheres 16.0
2087 Female, age 72, unknown 15.5
Ventral tegmental area
nTPM: 24.8
2223 Female, age 72, unknown 42.0
2410 Female, age 72, unknown 28.1
2021 Male, age 53, unknown 22.4
2218 Male, age 76, both hemispheres 19.8
1942 Male, age 51, unknown 19.5
1915 Female, age 42, unknown 16.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.9
Samples: 139

Max nTPM: 5.9
Min nTPM: 0.3
Std nTPM: 1.1
Median nTPM: 1.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 4.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 4.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 4.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 4.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.6
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.5
Sample A Female 3.7
Sample B Female 6.6
Sample C Male 4.5
Sample D Male 3.5
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 5.4
Min nTPM: 2.7
Sample A Female 5.4
Sample B Female 3.5
Sample C Male 3.5
Sample D Male 2.7
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.7
Min nTPM: 2.7
Sample B Female 3.7
Sample C Male 2.9
Sample D Male 2.7
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 16.1
Min nTPM: 2.7
Sample A Female 5.5
Sample B Female 16.1
Sample C Male 3.2
Sample D Male 2.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.1
Sample A Male 2.7
Sample B Male 3.4
Sample C Female 2.2
Sample D Female 2.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70218643 Antisense, RP_050519_04_G12, Mouse strain C57BL/6J (56 days, male) 0.1

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