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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:109.5 nTPM
HPA Brain:42.0 nTPM
GTEx:109.5 nTPM
FANTOM5:66.4 Scaled Tags Per Million
Mouse:232.5 nTPM
Allen mouse:17.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.0
Sample id Sample description nTPM
Amygdala
nTPM: 42.0
2814 Male, age 76, right hemisphere 46.0
2514 Male, age 75, right hemisphere 45.8
1987 Female, age 91, left hemisphere 43.1
2695 Female, age 67, right hemisphere 39.0
2517 Female, age 94, left hemisphere 36.2
Basal amygdala
nTPM: 32.4
1955 Male, age 76, both hemispheres 38.2
2110 Male, age 80, left hemisphere 37.4
2609 Male, age 75, right hemisphere 35.3
2685 Female, age 94, left hemisphere 31.4
2243 Female, age 91, right hemisphere 28.1
2827 Female, age 67, right hemisphere 23.7
Central amygdala
nTPM: 39.0
2826 Female, age 94, left hemisphere 48.1
1905 Male, age 76, both hemispheres 46.6
2515 Male, age 75, right hemisphere 43.0
2239 Male, age 80, left hemisphere 29.6
2701 Female, age 91, right hemisphere 27.6
Corticomedial amygdala
nTPM: 32.9
2829 Male, age 80, left hemisphere 39.6
2428 Male, age 75, right hemisphere 37.8
2429 Female, age 94, left hemisphere 36.1
2240 Male, age 76, both hemispheres 29.9
2242 Female, age 91, right hemisphere 29.5
2535 Female, age 67, right hemisphere 24.2
Lateral amygdala
nTPM: 34.8
1883 Male, age 76, both hemispheres 47.5
2534 Female, age 94, left hemisphere 42.8
2516 Male, age 75, right hemisphere 39.6
2830 Female, age 67, right hemisphere 27.4
2256 Male, age 80, left hemisphere 26.4
2255 Female, age 91, right hemisphere 25.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 109.5
Samples: 152

Max nTPM: 697.9
Min nTPM: 54.6
Std nTPM: 58.7
Median nTPM: 99.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 697.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 277.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 258.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 201.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 180.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 178.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 169.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 165.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 159.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 158.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 155.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 155.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 151.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 149.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 148.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 144.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 144.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 144.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 141.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 141.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 140.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 139.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 138.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 138.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 137.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 136.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 136.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 136.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 134.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 132.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 129.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 126.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 125.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 123.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 123.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 122.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 122.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 121.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 120.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 117.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 116.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 115.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 112.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 112.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 112.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 111.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 110.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 110.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 109.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 108.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 108.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 107.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 107.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 106.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 105.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 104.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 103.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 102.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 101.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 99.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 99.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 99.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 99.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 98.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 98.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 98.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 97.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 96.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 94.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 93.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 93.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 93.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 92.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 92.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 91.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 91.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 91.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 90.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 90.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 90.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 89.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 88.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 88.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 88.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 87.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 87.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 86.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 85.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 84.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 83.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 82.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 82.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 80.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 80.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 80.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 79.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 79.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 78.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 77.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 77.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 76.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 74.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 73.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 72.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 71.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 70.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 70.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 69.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 66.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 65.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 64.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 63.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 62.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 62.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 62.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 62.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 54.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 66.4
FF:10151-102I7 76 years, female 66.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 232.5
Samples: 4

Max nTPM: 235.5
Min nTPM: 226.7
Sample A Male 226.7
Sample B Male 232.5
Sample C Female 235.4
Sample D Female 235.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.1
69734875 Antisense, RP_050503_01_E03, Mouse strain C57BL/6J (56 days, male) 17.1

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