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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:241.4 nTPM
HPA Brain:236.7 nTPM
GTEx:241.4 nTPM
FANTOM5:222.7 Scaled Tags Per Million
Pig:85.5 nTPM
Mouse:12.6 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.7
Sample id Sample description nTPM
Amygdala
nTPM: 216.2
2514 Male, age 75, right hemisphere 414.7
1987 Female, age 91, left hemisphere 230.3
2517 Female, age 94, left hemisphere 190.9
2814 Male, age 76, right hemisphere 129.2
2695 Female, age 67, right hemisphere 115.6
Basal amygdala
nTPM: 207.6
2609 Male, age 75, right hemisphere 418.5
2243 Female, age 91, right hemisphere 257.5
2110 Male, age 80, left hemisphere 198.8
1955 Male, age 76, both hemispheres 163.6
2685 Female, age 94, left hemisphere 136.2
2827 Female, age 67, right hemisphere 70.9
Central amygdala
nTPM: 192.2
2701 Female, age 91, right hemisphere 256.5
2515 Male, age 75, right hemisphere 226.1
2239 Male, age 80, left hemisphere 223.8
1905 Male, age 76, both hemispheres 140.5
2826 Female, age 94, left hemisphere 114.1
Corticomedial amygdala
nTPM: 236.7
2428 Male, age 75, right hemisphere 410.4
2829 Male, age 80, left hemisphere 255.5
2242 Female, age 91, right hemisphere 252.2
2429 Female, age 94, left hemisphere 237.2
2240 Male, age 76, both hemispheres 161.0
2535 Female, age 67, right hemisphere 104.0
Lateral amygdala
nTPM: 190.8
2516 Male, age 75, right hemisphere 393.5
2255 Female, age 91, right hemisphere 269.9
2256 Male, age 80, left hemisphere 161.8
1883 Male, age 76, both hemispheres 142.4
2534 Female, age 94, left hemisphere 115.8
2830 Female, age 67, right hemisphere 61.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 241.4
Samples: 152

Max nTPM: 731.0
Min nTPM: 2.6
Std nTPM: 140.7
Median nTPM: 218.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 731.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 702.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 642.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 634.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 578.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 570.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 510.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 486.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 482.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 478.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 465.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 462.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 453.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 446.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 435.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 419.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 418.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 407.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 402.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 397.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 396.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 395.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 391.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 390.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 374.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 368.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 361.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 357.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 356.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 344.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 328.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 327.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 325.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 324.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 323.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 323.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 322.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 322.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 321.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 319.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 314.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 313.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 312.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 310.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 310.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 298.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 295.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 285.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 283.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 280.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 279.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 272.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 271.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 267.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 265.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 265.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 261.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 257.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 257.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 254.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 252.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 251.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 249.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 245.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 244.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 240.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 236.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 236.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 236.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 234.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 233.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 229.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 226.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 226.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 221.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 219.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 216.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 215.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 211.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 210.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 208.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 208.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 202.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 202.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 199.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 199.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 199.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 198.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 188.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 187.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 184.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 182.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 180.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 175.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 174.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 173.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 171.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 167.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 165.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 162.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 162.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 155.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 154.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 153.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 146.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 145.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 145.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 144.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 142.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 141.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 137.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 134.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 133.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 133.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 132.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 132.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 131.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 121.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 119.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 112.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 102.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 91.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 84.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 80.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 79.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 77.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 73.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 71.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 54.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 52.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 51.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 24.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 16.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 222.7
FF:10151-102I7 76 years, female 222.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.5
Pig sample Sample description nTPM
Amygdala
nTPM: 85.5
Samples: 4

Max nTPM: 94.8
Min nTPM: 75.5
Sample A Female 81.2
Sample B Female 94.8
Sample C Male 90.5
Sample D Male 75.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 12.6
Samples: 4

Max nTPM: 22.6
Min nTPM: 5.7
Sample A Male 8.9
Sample B Male 5.7
Sample C Female 22.6
Sample D Female 13.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
75079777 Antisense, RP_060412_02_F06, Mouse strain C57BL/6J (56 days, male) 0.3
75694250 Antisense, RP_060412_02_F06, Mouse strain C57BL/6J (56 days, male) 0.2

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