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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:261.9 nTPM
FANTOM5:242.4 Scaled Tags Per Million
Pig:73.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044546
Glial cells High
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 261.9
Samples: 246

Max nTPM: 762.1
Min nTPM: 13.7
Std nTPM: 115.5
Median nTPM: 246.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 762.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 578.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 560.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 537.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 536.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 514.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 508.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 507.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 505.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 486.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 480.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 471.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 470.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 470.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 465.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 465.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 462.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 461.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 439.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 432.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 427.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 423.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 420.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 419.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 405.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 402.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 401.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 390.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 388.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 388.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 387.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 385.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 383.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 381.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 378.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 373.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 373.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 372.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 372.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 371.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 370.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 367.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 366.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 361.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 360.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 360.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 359.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 356.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 356.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 355.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 353.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 351.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 350.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 349.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 348.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 347.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 347.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 346.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 345.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 344.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 341.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 338.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 336.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 333.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 331.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 329.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 327.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 326.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 325.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 324.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 324.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 324.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 318.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 318.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 317.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 313.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 311.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 306.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 305.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 304.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 302.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 302.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 302.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 300.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 299.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 297.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 296.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 295.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 295.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 294.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 292.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 292.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 289.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 288.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 284.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 283.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 281.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 281.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 280.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 278.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 276.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 276.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 273.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 271.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 266.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 263.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 262.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 262.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 262.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 261.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 260.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 257.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 256.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 256.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 255.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 255.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 254.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 254.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 253.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 253.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 250.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 250.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 246.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 245.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 245.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 243.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 242.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 242.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 241.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 240.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 233.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 232.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 231.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 230.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 230.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 229.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 229.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 228.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 227.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 225.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 225.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 224.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 224.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 223.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 223.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 223.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 222.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 220.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 217.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 216.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 215.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 214.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 213.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 213.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 209.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 208.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 207.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 207.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 207.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 207.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 206.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 205.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 205.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 205.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 205.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 204.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 204.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 203.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 202.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 202.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 198.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 198.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 197.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 197.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 195.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 194.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 194.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 193.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 191.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 188.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 188.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 188.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 187.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 185.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 182.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 181.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 181.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 181.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 179.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 179.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 177.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 176.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 176.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 174.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 173.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 172.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 171.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 166.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 164.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 163.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 162.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 160.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 160.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 160.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 159.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 158.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 156.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 156.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 152.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 151.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 151.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 150.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 148.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 148.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 147.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 143.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 138.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 137.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 137.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 133.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 133.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 132.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 128.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 126.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 126.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 120.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 113.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 112.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 103.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 97.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 96.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 94.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 86.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 80.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 75.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 73.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 68.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 60.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 53.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 47.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 40.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 38.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 24.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 20.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 13.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

242.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 242.4
FF:10164-103B2 76 years, female 242.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.6
Pig sample Sample description nTPM
Caudate
nTPM: 73.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 62.0
Sample A Female 71.7
Sample B Female 83.8
Sample C Male 76.9
Sample D Male 62.0

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