MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:135.9 nTPM
HPA Brain:95.3 nTPM
GTEx:135.9 nTPM
FANTOM5:230.9 Scaled Tags Per Million
Pig:145.1 nTPM
Mouse:77.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.6
2666 Male, age 74, left hemisphere 101.6
2586 Male, age 75, left hemisphere 100.6
1870 Female, age 42, unknown 95.3
2411 Female, age 72, unknown 91.1
1830 Male, age 51, unknown 89.6
2019 Male, age 18, unknown 87.2
1833 Male, age 53, unknown 85.8
1827 Male, age 72, unknown 78.2
2828 Female, age 72, unknown 72.0
2219 Male, age 76, both hemispheres 54.1
Dorsal raphe nucleus
nTPM: 79.4
2016 Female, age 72, unknown 84.9
1828 Male, age 53, unknown 83.6
2750 Male, age 76, both hemispheres 82.8
2047 Male, age 72, unknown 78.9
2298 Female, age 72, unknown 66.6
Inferior colliculus
nTPM: 80.5
1848 Female, age 42, unknown 87.0
2849 Male, age 72, unknown 83.9
2097 Female, age 72, unknown 75.8
1890 Male, age 53, unknown 75.4
Median raphe nucleus
nTPM: 83.2
2220 Male, age 76, midline 83.2
Periaquaductal grey, anterior
nTPM: 78.3
1947 Male, age 18, unknown 86.2
2502 Female, age 75, unknown 78.6
1795 Male, age 51, unknown 70.0
Periaquaductal grey, dorsal
nTPM: 74.1
2464 Female, age 72, unknown 80.0
2850 Male, age 76, both hemispheres 74.4
1840 Male, age 53, unknown 72.6
1831 Male, age 72, unknown 69.3
Periaquaductal grey, lateral
nTPM: 68.2
2053 Male, age 18, unknown 79.9
2140 Male, age 76, both hemispheres 65.3
2272 Male, age 74, both hemispheres 59.5
Pretectal area
nTPM: 73.5
2825 Male, age 18, unknown 82.4
1817 Female, age 42, unknown 80.5
1815 Male, age 53, unknown 80.2
1816 Male, age 51, unknown 79.3
2007 Male, age 72, unknown 79.1
2407 Male, age 75, both hemispheres 76.7
1944 Female, age 72, unknown 72.4
2224 Female, age 72, unknown 68.6
2316 Male, age 76, right hemisphere 68.4
2667 Female, age 75, unknown 61.9
2273 Male, age 74, both hemispheres 59.1
Red nucleus
nTPM: 95.3
2588 Male, age 74, left hemisphere 111.9
1821 Female, age 72, unknown 109.6
1954 Female, age 42, unknown 108.6
2503 Female, age 72, unknown 102.9
1865 Male, age 51, unknown 100.7
1904 Male, age 53, unknown 96.9
2227 Male, age 72, unknown 96.4
2769 Male, age 72, unknown 91.2
2823 Male, age 76, right hemisphere 87.6
2584 Male, age 75, left hemisphere 82.2
2725 Female, age 75, unknown 78.4
2785 Male, age 18, unknown 76.8
Substantia nigra
nTPM: 79.2
2665 Male, age 74, both hemispheres 95.4
2590 Female, age 75, unknown 90.8
2241 Male, age 72, unknown 86.0
2583 Male, age 75, right hemisphere 83.7
1889 Female, age 72, unknown 83.0
1941 Male, age 53, unknown 78.4
1851 Male, age 51, unknown 72.3
2409 Female, age 72, unknown 72.2
2699 Male, age 18, unknown 68.4
1916 Female, age 42, unknown 61.9
Superior colliculus
nTPM: 81.0
2668 Female, age 75, unknown 98.0
2587 Male, age 74, left hemisphere 94.9
2664 Male, age 75, both hemispheres 92.1
1839 Male, age 51, unknown 85.3
1913 Female, age 42, unknown 82.0
1995 Male, age 72, unknown 76.2
2261 Male, age 18, unknown 74.8
2087 Female, age 72, unknown 72.0
1895 Male, age 76, right hemisphere 70.8
1796 Male, age 53, unknown 63.9
Ventral tegmental area
nTPM: 78.4
2223 Female, age 72, unknown 93.4
2021 Male, age 53, unknown 87.9
1915 Female, age 42, unknown 77.1
2410 Female, age 72, unknown 74.6
1942 Male, age 51, unknown 72.1
2218 Male, age 76, both hemispheres 65.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 135.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 135.9
Samples: 139

Max nTPM: 312.2
Min nTPM: 60.7
Std nTPM: 51.9
Median nTPM: 124.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 312.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 299.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 281.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 258.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 252.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 251.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 249.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 242.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 240.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 234.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 222.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 230.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 230.9
FF:10158-103A5 76 years, female 230.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 145.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.5
Samples: 4

Max nTPM: 157.1
Min nTPM: 94.5
Sample A Female 157.1
Sample B Female 128.2
Sample C Male 122.2
Sample D Male 94.5
Midbrain
nTPM: 140.1
Samples: 4

Max nTPM: 152.9
Min nTPM: 133.6
Sample A Female 133.6
Sample B Female 137.2
Sample C Male 152.9
Sample D Male 136.8
Periaqueductal gray
nTPM: 113.9
Samples: 3

Max nTPM: 120.2
Min nTPM: 102.0
Sample B Female 119.6
Sample C Male 120.2
Sample D Male 102.0
Superior colliculi
nTPM: 145.1
Samples: 4

Max nTPM: 159.7
Min nTPM: 129.0
Sample A Female 159.7
Sample B Female 136.2
Sample C Male 155.3
Sample D Male 129.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 77.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.0
Samples: 4

Max nTPM: 89.4
Min nTPM: 67.6
Sample A Male 89.4
Sample B Male 73.2
Sample C Female 67.6
Sample D Female 77.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978735 Antisense, RP_040923_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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