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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:433.6 nTPM
FANTOM5:408.9 Scaled Tags Per Million
Pig:91.6 nTPM
Allen mouse:0.1 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.6
Sample id Sample description nTPM
Area postrema
nTPM: 282.0
2306 Male, age 80, both hemispheres 449.9
2799 Male, age 61, both hemispheres 237.3
2054 Male, age 76, both hemispheres 158.9
Dorsal medullary reticular nucleus
nTPM: 276.5
2040 Female, age 85, both hemispheres 312.3
2373 Male, age 61, both hemispheres 287.5
2088 Male, age 76, both hemispheres 229.7
Dorsal motor vagal complex
nTPM: 199.4
2185 Male, age 76, both hemispheres 297.2
2807 Female, age 85, both hemispheres 241.4
2000 Male, age 74, unknown 227.6
2133 Female, age 91, both hemispheres 201.0
2813 Female, age 72, unknown 168.3
2797 Male, age 61, both hemispheres 166.8
2643 Male, age 74, both hemispheres 166.0
2844 Male, age 55, unknown 127.2
Gigantocellular reticular nuclei, medullary
nTPM: 305.5
2314 Male, age 61, both hemispheres 441.9
2387 Female, age 91, both hemispheres 369.7
1876 Female, age 85, both hemispheres 352.7
2022 Male, age 76, right hemisphere 269.6
2310 Male, age 80, both hemispheres 226.6
2462 Male, age 74, both hemispheres 172.5
Gigantocellular reticular nuclei, pars
nTPM: 245.9
2336 Male, age 61, both hemispheres 290.3
2706 Male, age 80, both hemispheres 276.8
2330 Male, age 80, both hemispheres 252.8
2084 Female, age 85, both hemispheres 227.8
2168 Male, age 76, both hemispheres 181.7
Inferior olive
nTPM: 329.6
2178 Male, age 61, both hemispheres 444.2
2379 Male, age 80, both hemispheres 327.6
2085 Female, age 85, both hemispheres 300.2
2563 Male, age 74, both hemispheres 289.8
2628 Female, age 91, both hemispheres 286.1
Lateral medullary reticular nucleus
nTPM: 358.5
2852 Male, age 80, both hemispheres 440.2
2305 Male, age 74, both hemispheres 412.2
2374 Male, age 61, both hemispheres 403.8
2190 Female, age 85, both hemispheres 340.6
2804 Female, age 91, both hemispheres 280.9
2044 Male, age 76, both hemispheres 273.3
Medial olivary nucleus
nTPM: 424.8
1943 Male, age 61, both hemispheres 600.5
1962 Male, age 76, both hemispheres 422.3
2851 Male, age 80, both hemispheres 350.5
2138 Female, age 91, both hemispheres 325.8
Medial vestibular nucleus
nTPM: 261.2
2803 Female, age 91, both hemispheres 360.3
2801 Male, age 74, both hemispheres 339.7
2093 Male, age 80, both hemispheres 278.9
2624 Male, age 61, both hemispheres 253.9
2743 Female, age 85, both hemispheres 209.3
2134 Male, age 76, both hemispheres 125.1
Motor hypoglossal nucleus
nTPM: 247.0
2132 Female, age 85, both hemispheres 341.0
2125 Female, age 91, both hemispheres 327.1
2182 Male, age 80, both hemispheres 307.9
2461 Male, age 61, both hemispheres 155.5
2277 Male, age 76, both hemispheres 103.6
Nucleus ambiguus
nTPM: 294.7
2071 Male, age 76, both hemispheres 427.2
2096 Female, age 85, both hemispheres 162.3
Nucleus cuneatus
nTPM: 301.7
2380 Male, age 80, both hemispheres 488.0
2808 Female, age 85, both hemispheres 402.4
2381 Male, age 80, both hemispheres 383.7
2376 Male, age 61, both hemispheres 357.1
2100 Male, age 76, both hemispheres 262.3
2564 Male, age 74, both hemispheres 230.8
2805 Female, age 91, both hemispheres 208.2
2562 Male, age 61, both hemispheres 192.5
2131 Male, age 76, both hemispheres 190.6
Nucleus gracilis
nTPM: 411.8
2382 Male, age 80, both hemispheres 567.5
2299 Female, age 85, both hemispheres 354.3
2627 Male, age 74, both hemispheres 313.4
Nucleus raphe obscurus
nTPM: 433.6
2845 Female, age 85, midline 495.5
2800 Male, age 61, midline 409.5
2142 Male, age 76, midline 395.9
Nucleus raphe pallidus
nTPM: 393.8
1924 Male, age 61, midline 492.0
2145 Male, age 76, midline 386.0
2183 Male, age 80, midline 303.4
Nucleus tractus solitarii
nTPM: 148.6
2144 Female, age 91, right hemisphere 170.2
2307 Male, age 80, both hemispheres 146.7
2191 Female, age 85, both hemispheres 143.3
2656 Male, age 76, both hemispheres 134.1
Parvicellular reticular nuclei
nTPM: 252.2
2095 Male, age 76, both hemispheres 279.7
2119 Male, age 80, both hemispheres 274.8
2558 Male, age 74, both hemispheres 202.2
Parvicellular reticular nuclei, medullary
nTPM: 253.5
2189 Female, age 91, both hemispheres 269.8
2091 Female, age 85, both hemispheres 254.0
2181 Male, age 80, left hemisphere 236.7
Peritrigeminal nucleus
nTPM: 291.2
2179 Male, age 61, both hemispheres 322.1
2067 Female, age 85, both hemispheres 282.5
2136 Male, age 76, both hemispheres 269.0
Prepositus hypoglossal nucleus
nTPM: 283.4
2855 Female, age 85, right hemisphere 365.3
2086 Male, age 80, both hemispheres 201.4
Spinal trigeminal nucleus, caudal
nTPM: 300.8
2312 Male, age 61, both hemispheres 463.2
2308 Male, age 80, both hemispheres 307.7
2390 Female, age 91, both hemispheres 276.1
2447 Male, age 76, both hemispheres 235.7
2642 Male, age 74, both hemispheres 221.1
Spinal trigeminal nucleus, interpolar
nTPM: 234.8
2386 Female, age 85, both hemispheres 296.9
2389 Female, age 91, both hemispheres 271.7
2033 Male, age 80, both hemispheres 265.3
2066 Male, age 76, right hemisphere 184.8
2625 Male, age 61, both hemispheres 155.3
Spinal vestibular nucleus
nTPM: 303.6
2806 Female, age 85, both hemispheres 389.4
2748 Male, age 76, both hemispheres 359.6
2186 Female, age 91, both hemispheres 310.1
2384 Male, age 74, both hemispheres 280.5
2780 Male, age 80, both hemispheres 263.0
2796 Male, age 61, both hemispheres 218.8
Superior vestibular nucleus
nTPM: 223.9
2015 Male, age 80, both hemispheres 275.3
2383 Male, age 74, both hemispheres 214.1
2061 Male, age 76, both hemispheres 182.3
Ventral medullary reticular nucleus
nTPM: 344.5
2372 Male, age 61, both hemispheres 407.4
2060 Male, age 76, both hemispheres 281.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 310.3
2180 Male, age 61, both hemispheres 389.5
2118 Male, age 80, both hemispheres 378.8
2741 Female, age 85, both hemispheres 277.4
1986 Male, age 76, both hemispheres 260.4
2302 Female, age 91, both hemispheres 245.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 408.9
FF:10038-101F2 18-64 years, mixed 447.2
FF:10174-103C3 60 years, female 399.4
FF:10155-103A2 76 years, female 380.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 91.6
Samples: 4

Max nTPM: 105.7
Min nTPM: 69.9
Sample A Female 105.7
Sample B Female 69.9
Sample C Male 88.5
Sample D Male 102.3

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.1
583855 Antisense, RP_040831_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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