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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:33.8 nTPM
HPA Brain:54.4 nTPM
GTEx:33.8 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Pig:89.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 37.2
1981 Female, age 72, midline 41.5
2048 Male, age 55, midline 39.1
2565 Male, age 75, midline 38.4
2816 Male, age 47, midline 34.3
2194 Female, age 79, both hemispheres 32.7
Cervical spinal cord, dorsal horn
nTPM: 35.2
2173 Female, age 72, unknown 47.9
2296 Male, age 66, both hemispheres 42.3
2069 Male, age 47, both hemispheres 33.8
2297 Male, age 75, both hemispheres 33.4
1877 Male, age 55, unknown 29.7
2721 Male, age 90, both hemispheres 24.4
Cervical spinal cord, ventral horn
nTPM: 54.4
2480 Male, age 75, both hemispheres 78.8
2809 Male, age 90, both hemispheres 67.9
2295 Male, age 66, both hemispheres 52.3
2098 Female, age 72, unknown 49.2
2068 Male, age 55, unknown 43.1
2820 Female, age 79, both hemispheres 35.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 33.8
Samples: 159

Max nTPM: 83.3
Min nTPM: 11.9
Std nTPM: 13.2
Median nTPM: 31.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 83.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 75.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 70.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 64.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 64.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 61.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 59.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 59.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 57.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 56.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 55.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 54.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 52.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 52.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 52.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 50.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 49.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 48.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 48.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 48.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 48.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 47.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 46.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 45.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 44.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 44.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 43.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 43.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 43.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 43.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 42.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 42.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 42.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 42.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 42.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 42.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 41.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 41.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 41.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 40.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 40.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 40.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 40.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 40.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 39.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 39.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 39.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 38.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 37.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 37.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 37.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 36.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 36.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 35.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 35.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 35.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 35.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 34.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 34.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 34.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 34.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 34.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 34.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 33.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 33.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 33.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 33.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 33.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 33.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 32.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 31.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 31.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 31.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 31.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 31.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 31.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 31.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 31.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 31.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 31.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 31.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 31.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 30.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 30.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 30.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 29.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 29.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 29.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 29.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 29.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 28.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 28.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 28.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 28.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 27.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 27.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 27.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 27.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 27.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 27.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 26.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 26.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 26.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 26.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 26.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 26.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 26.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 26.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 25.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 25.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 25.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 24.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 24.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 24.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 24.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 24.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 23.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 23.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 23.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 23.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 22.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 22.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 22.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 22.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 22.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 22.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 22.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 22.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 22.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 22.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 22.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 21.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 20.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 20.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 20.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 20.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 20.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 19.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 19.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 19.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 19.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 18.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 18.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 18.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 18.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 17.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 17.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 16.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 16.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 15.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 14.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 14.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 13.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 13.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 13.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 11.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 53.8
FF:10181-103D1 60 years, female 60.5
FF:10159-103A6 76 years, female 47.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 81.7
Samples: 4

Max nTPM: 93.9
Min nTPM: 71.6
Sample A Female 71.6
Sample B Female 93.9
Sample C Male 72.4
Sample D Male 89.0
Ventral spinal cord
nTPM: 89.2
Samples: 4

Max nTPM: 131.2
Min nTPM: 59.8
Sample A Female 84.5
Sample B Female 81.4
Sample C Male 59.8
Sample D Male 131.2

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