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SFXN1
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SFXN1
Synonyms FLJ12876, SLC56A1
Gene descriptioni

Full gene name according to HGNC.

Sideroflexin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband q35.2
Chromosome location (bp) 175477062 - 175529742
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000164466 (version 109)
Entrez gene 94081
HGNC HGNC:16085
UniProt Q9H9B4 (UniProt - Evidence at protein level)
neXtProt NX_Q9H9B4
GeneCards SFXN1
Antibodypedia SFXN1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Amino acid transporter importing serine, an essential substrate of the mitochondrial branch of the one-carbon pathway, into mitochondria. Mitochondrial serine is then converted to glycine and formate, which exits to the cytosol where it is used to generate the charged folates that serve as one-carbon donors 1. May also transport other amino acids including alanine and cysteine 2.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Amino-acid transport, One-carbon metabolism, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables D-serine transmembrane transporter activity and L-serine transmembrane transporter activity. Involved in D-serine transport; L-serine transport; and serine import into mitochondrion. Located in mitochondrion. Is integral component of mitochondrial inner membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SFXN1-201
ENSP00000316905
ENST00000321442
Q9H9B4
[Direct mapping] Sideroflexin-1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0006730 [one-carbon metabolic process]
GO:0006811 [ion transport]
GO:0006826 [iron ion transport]
GO:0006865 [amino acid transport]
GO:0015075 [ion transmembrane transporter activity]
GO:0015180 [L-alanine transmembrane transporter activity]
GO:0015194 [L-serine transmembrane transporter activity]
GO:0015808 [L-alanine transport]
GO:0015825 [L-serine transport]
GO:0016020 [membrane]
GO:0022857 [transmembrane transporter activity]
GO:0022889 [serine transmembrane transporter activity]
GO:0030218 [erythrocyte differentiation]
GO:0055085 [transmembrane transport]
GO:0140300 [serine import into mitochondrion]
GO:1990542 [mitochondrial transmembrane transport]
Show all
322 aa
35.6 kDa
No 5
SFXN1-203
ENSP00000473710
ENST00000502393
S4R2X2
[Direct mapping] Sideroflexin-1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005739 [mitochondrion]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015075 [ion transmembrane transporter activity]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0055085 [transmembrane transport]
Show all
177 aa
19.9 kDa
No 1
SFXN1-205
ENSP00000421467
ENST00000506963
D6RFI0
[Direct mapping] Sideroflexin-1
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015075 [ion transmembrane transporter activity]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0055085 [transmembrane transport]
Show all
193 aa
21.4 kDa
No 0
SFXN1-206
ENSP00000420961
ENST00000507017
D6RDG7
[Direct mapping] Sideroflexin-1
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015075 [ion transmembrane transporter activity]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0055085 [transmembrane transport]
Show all
144 aa
16.6 kDa
No 0

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