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USP49
HPA
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  • USP49
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

USP49
Synonyms MGC20741
Gene descriptioni

Full gene name according to HGNC.

Ubiquitin specific peptidase 49
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband p21.1
Chromosome location (bp) 41789896 - 41895375
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000164663 (version 109)
Entrez gene 25862
HGNC HGNC:20078
UniProt Q70CQ1 (UniProt - Evidence at protein level)
neXtProt NX_Q70CQ1
GeneCards USP49
Antibodypedia USP49 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Deubiquitinase that plays a role in several cellular processes including transcriptional regulation, cell cycle progression or innate immunity. Specifically deubiquitinates histone H2B at 'Lys-120' (H2BK120Ub), a specific tag for epigenetic transcriptional activation and acts as a regulator of mRNA splicing 1. Antagonizes DNA double-strand break-induced ubiquitination of H2AX thereby participating in the maintenance of genome integrity 2. Plays a role in the negative regulation of cell proliferation through the AKT pathway by deubiquitinating FKBP51, leading to enhanced AKT1 dephosphorylation by PHLPP1 3. Regulates also the mitotic spindle checkpoint and prevents aneuploidy 4. Negatively regulates cellular antiviral responses via deconjugating 'Lys-63'-linked ubiquitination of STING1 5. Significantly enhances the anti-HIV-1 activity of APOBEC3G. Mechanistically, stabilizes APOBEC3G by counteracting HIV-1 Vif-mediated APOBEC3G ubiquitination 6.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator, Hydrolase, Protease, Thiol protease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

mRNA processing, mRNA splicing, Ubl conjugation pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables cysteine-type endopeptidase activity; histone binding activity; and thiol-dependent deubiquitinase. Involved in histone H2B conserved C-terminal lysine deubiquitination and mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
USP49-201
ENSP00000362097
ENST00000373006
Q70CQ1
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 49
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006325 [chromatin organization]
GO:0006397 [mRNA processing]
GO:0006508 [proteolysis]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0016787 [hydrolase activity]
GO:0035616 [histone H2B conserved C-terminal lysine deubiquitination]
GO:0042393 [histone binding]
GO:0046872 [metal ion binding]
Show all
640 aa
73.5 kDa
No 0
USP49-202
ENSP00000362101
ENST00000373010
Q5T3E1
[Direct mapping] Ubiquitinyl hydrolase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008270 [zinc ion binding]
GO:0016579 [protein deubiquitination]
GO:0046872 [metal ion binding]
Show all
585 aa
67.5 kDa
No 0
USP49-203
ENSP00000377797
ENST00000394253
Q70CQ1
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 49
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006325 [chromatin organization]
GO:0006397 [mRNA processing]
GO:0006508 [proteolysis]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0016787 [hydrolase activity]
GO:0035616 [histone H2B conserved C-terminal lysine deubiquitination]
GO:0042393 [histone binding]
GO:0046872 [metal ion binding]
Show all
688 aa
79.2 kDa
No 0
USP49-204
ENSP00000411603
ENST00000423567
A6PVU3
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 49
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
15 aa
1.8 kDa
No 0
USP49-206
ENSP00000507239
ENST00000682992
Q70CQ1
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 49
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006325 [chromatin organization]
GO:0006397 [mRNA processing]
GO:0006508 [proteolysis]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0016787 [hydrolase activity]
GO:0035616 [histone H2B conserved C-terminal lysine deubiquitination]
GO:0042393 [histone binding]
GO:0046872 [metal ion binding]
Show all
688 aa
79.2 kDa
No 0

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