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SPIDR
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SPIDR
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SPIDR
Synonyms KIAA0146
Gene descriptioni

Full gene name according to HGNC.

Scaffold protein involved in DNA repair
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 8
Cytoband q11.21
Chromosome location (bp) 47260878 - 47736306
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000164808 (version 109)
Entrez gene 23514
HGNC HGNC:28971
UniProt Q14159 (UniProt - Evidence at protein level)
neXtProt NX_Q14159
GeneCards SPIDR
Antibodypedia SPIDR antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in DNA double-strand break (DBS) repair via homologous recombination (HR). Serves as a scaffolding protein that helps to promote the recruitment of DNA-processing enzymes like the helicase BLM and recombinase RAD51 to site of DNA damage, and hence contributes to maintain genomic integrity.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA recombination, DNA repair
Gene summary (Entrez)i

Useful information about the gene from Entrez

Involved in several processes, including cellular response to camptothecin; cellular response to hydroxyurea; and regulation of double-strand break repair. Located in nuclear chromosome and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SPIDR-201
ENSP00000297423
ENST00000297423
Q14159
[Direct mapping] DNA repair-scaffolding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000228 [nuclear chromosome]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006281 [DNA repair]
GO:0006310 [DNA recombination]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0010569 [regulation of double-strand break repair via homologous recombination]
GO:0031334 [positive regulation of protein-containing complex assembly]
GO:0070202 [regulation of establishment of protein localization to chromosome]
GO:0071479 [cellular response to ionizing radiation]
GO:0072711 [cellular response to hydroxyurea]
GO:0072757 [cellular response to camptothecin]
GO:2000781 [positive regulation of double-strand break repair]
Show all
915 aa
100.3 kDa
No 0
SPIDR-202
ENSP00000427878
ENST00000517619
E5RFY2
[Direct mapping] DNA repair-scaffolding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
92 aa
10.2 kDa
No 0
SPIDR-203
ENSP00000427889
ENST00000517693
B3KP42
[Direct mapping] DNA repair-scaffolding protein; cDNA FLJ31118 fis, clone IMR322000656
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
GO:0005654 [nucleoplasm]
Show all
390 aa
42.8 kDa
No 0
SPIDR-205
ENSP00000429448
ENST00000518060
E5RIB8
[Direct mapping] DNA repair-scaffolding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
95 aa
10.9 kDa
No 0
SPIDR-206
ENSP00000429487
ENST00000518074
Q14159
[Direct mapping] DNA repair-scaffolding protein
Show all
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000228 [nuclear chromosome]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006281 [DNA repair]
GO:0006310 [DNA recombination]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0010569 [regulation of double-strand break repair via homologous recombination]
GO:0031334 [positive regulation of protein-containing complex assembly]
GO:0070202 [regulation of establishment of protein localization to chromosome]
GO:0071479 [cellular response to ionizing radiation]
GO:0072711 [cellular response to hydroxyurea]
GO:0072757 [cellular response to camptothecin]
GO:2000781 [positive regulation of double-strand break repair]
Show all
876 aa
96.9 kDa
No 0
SPIDR-211
ENSP00000429193
ENST00000519401
H0YBC9
[Direct mapping] DNA repair-scaffolding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
GO:0005654 [nucleoplasm]
Show all
497 aa
54 kDa
No 0
SPIDR-222
ENSP00000430091
ENST00000524006
E5RGX8
[Direct mapping] DNA repair-scaffolding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
152 aa
16.6 kDa
No 0
SPIDR-227
ENSP00000444061
ENST00000541342
Q14159
[Direct mapping] DNA repair-scaffolding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000228 [nuclear chromosome]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006281 [DNA repair]
GO:0006310 [DNA recombination]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0010569 [regulation of double-strand break repair via homologous recombination]
GO:0031334 [positive regulation of protein-containing complex assembly]
GO:0070202 [regulation of establishment of protein localization to chromosome]
GO:0071479 [cellular response to ionizing radiation]
GO:0072711 [cellular response to hydroxyurea]
GO:0072757 [cellular response to camptothecin]
GO:2000781 [positive regulation of double-strand break repair]
Show all
845 aa
92.9 kDa
No 0

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