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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:9494.8 nTPM
HPA:8242.5 nTPM
GTEx:9494.8 nTPM
FANTOM5:12409.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015775Antibody CAB069919
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -Medium
Goblet cells Not detected-
Paneth cells High-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8242.5
overview
Male, age 65
Small intestine sample 232
nTPM: 8752.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 7365.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 7869.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 8982.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9494.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 9494.8
Samples: 187

Max nTPM: 57818.7
Min nTPM: 1.8
Std nTPM: 9632.6
Median nTPM: 6688.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 57818.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 39535.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 38978.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 34864.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 32132.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 31739.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 29212.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 28582.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 27078.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 26718.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 26569.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 26286.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 26204.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 25579.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 24501.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 23441.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 23199.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 23076.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 22934.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 22892.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 22879.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 22738.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 21923.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 21912.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 21036.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 20833.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 20356.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 20290.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 20263.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 18905.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 18788.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 18663.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 18515.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 18175.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 18101.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 17798.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 17709.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 17265.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 17028.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 16900.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 16871.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 16171.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 15974.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 15364.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 14892.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 14875.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 14436.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 14334.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 14258.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 14154.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 13979.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 13948.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 13872.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 12926.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 12581.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 12458.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 12409.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 12359.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 12291.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 12066.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 11969.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 11926.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 11916.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 11407.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 11118.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 11109.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 10921.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 10646.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 10555.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 10016.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 9893.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9892.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 9447.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 9162.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 8959.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 8898.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 8787.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 8627.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 8517.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 8495.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 8393.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 8219.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 8071.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 7987.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 7934.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 7914.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 7909.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 7368.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 7332.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 7278.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 7174.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 6824.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 6782.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 6688.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 6647.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 6450.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 6234.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 6222.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 6212.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 5875.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 5688.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 5596.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 5369.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 5332.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 5277.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 5260.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 5164.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 5125.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 4910.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 4909.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 4760.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 4728.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 4726.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 4673.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4540.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 4449.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 4247.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 4136.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 3883.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3874.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3695.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 3631.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3555.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3477.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3412.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3363.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3184.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3181.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2842.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2842.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2704.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2650.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2542.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2435.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1906.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1893.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1819.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1695.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1654.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1626.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1588.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1560.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1396.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1339.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 1149.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1137.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 888.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 876.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 797.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 630.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 537.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 481.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 459.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 418.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 407.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 371.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 352.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 343.7
GTEX-1192X-2526-SM-59868 50-59 years, male 322.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 321.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 260.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 230.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 229.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 202.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 154.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 142.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 137.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 93.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 90.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 63.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 38.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 35.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 35.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 33.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 31.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 30.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 25.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 19.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 13.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 10.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 9.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 8.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 5.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12409.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 12409.9
FF:10024-101D6 15,40,85 years, mixed 12409.9

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