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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:4676.4 nTPM
HPA:4676.4 nTPM
GTEx:4463.2 nTPM
FANTOM5:3968.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019462
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells Not detected
Paneth cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4676.4
overview
Male, age 65
Small intestine sample 232
nTPM: 5161.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 4119.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 4382.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 5041.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4463.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 4463.2
Samples: 187

Max nTPM: 23341.7
Min nTPM: 0.8
Std nTPM: 4745.5
Median nTPM: 2753.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 23341.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 21783.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 17768.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 17611.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 16763.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 16187.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 15407.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 15372.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 14676.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 14535.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 14401.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 14015.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 13792.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 12340.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 12029.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 11794.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 11669.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 11580.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 11570.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 11170.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 11093.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 10934.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 10756.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 10149.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 10018.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 9812.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 9746.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 9729.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 9549.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 9383.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 9382.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 9264.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 8976.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 8692.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 8564.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 8559.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 8456.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 8296.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 8071.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 7756.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 7546.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 7409.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 7379.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 7153.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 6878.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 6741.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 6728.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 6586.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 6285.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 6214.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 6043.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 5796.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 5754.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 5704.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 5672.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 5612.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 5432.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 5414.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 5400.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 5379.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 5338.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 5284.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 5281.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 5124.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 5081.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 5057.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4837.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 4748.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 4676.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 4619.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 4412.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 4211.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 4197.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 4144.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 4039.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3878.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3859.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 3772.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3723.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3674.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3555.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 3531.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3339.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3338.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3307.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 3301.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 3290.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 3289.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3211.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2962.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2900.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2789.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2763.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 2753.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2745.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2700.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2695.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2685.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2684.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2683.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2679.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2585.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2576.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2564.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2309.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2247.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2220.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2193.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2176.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2168.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2165.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2158.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2044.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2002.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1974.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1969.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1964.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1932.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1911.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1863.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1764.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1668.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1643.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1612.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1532.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1505.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1450.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1450.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1412.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1040.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1035.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 976.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 976.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 972.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 893.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 876.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 830.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 806.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 698.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 628.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 611.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 610.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 601.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 492.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 475.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 451.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 383.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 290.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 246.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 209.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 189.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 181.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 180.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 167.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 148.5
GTEX-1192X-2526-SM-59868 50-59 years, male 146.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 113.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 111.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 102.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 94.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 81.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 80.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 74.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 68.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 67.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 58.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 54.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 36.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 33.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 18.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 16.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 14.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 13.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 13.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 11.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 9.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 5.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 5.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 3.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 0.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3968.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3968.5
FF:10024-101D6 15,40,85 years, mixed 3968.5

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