HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:45.2 nTPM
HPA Brain:51.3 nTPM
GTEx:45.2 nTPM
FANTOM5:135.6 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:86.4 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023296Antibody HPA053675
Glial cells HighMedium
Neuronal cells Not detectedNot detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 51.3
Sample id Sample description nTPM
Hippocampus
nTPM: 51.3
2148 Female, age 91, left hemisphere 63.5
2529 Female, age 94, left hemisphere 62.9
1911 Female, age 85, right hemisphere 55.7
1898 Male, age 80, left hemisphere 48.1
2621 Female, age 67, right hemisphere 38.9
1855 Male, age 76, left hemisphere 38.7
Dentate gyrus
nTPM: 36.8
2528 Male, age 74, both hemispheres 51.4
2246 Female, age 85, both hemispheres 43.1
2010 Male, age 76, both hemispheres 34.2
2530 Female, age 94, left hemisphere 34.1
1927 Female, age 91, both hemispheres 32.5
2531 Female, age 67, both hemispheres 25.7
Entorhinal gyrus
nTPM: 43.5
2117 Female, age 91, right hemisphere 76.7
1938 Female, age 85, left hemisphere 49.4
2686 Male, age 75, right hemisphere 37.3
1787 Male, age 76, left hemisphere 36.8
2764 Male, age 80, right hemisphere 34.2
2613 Female, age 94, left hemisphere 26.5
Hippocampus, CA1
nTPM: 42.4
2527 Male, age 74, both hemispheres 64.6
1873 Female, age 85, both hemispheres 46.4
2082 Female, age 91, right hemisphere 43.3
2045 Male, age 76, both hemispheres 30.6
2749 Male, age 80, left hemisphere 27.1
Hippocampus, CA2
nTPM: 42.5
2113 Female, age 91, right hemisphere 56.5
2249 Male, age 74, both hemispheres 51.1
1940 Female, age 85, left hemisphere 45.5
1963 Male, age 80, left hemisphere 41.6
2437 Female, age 94, left hemisphere 34.4
1892 Male, age 76, both hemispheres 25.9
Hippocampus, CA3
nTPM: 39.2
1891 Female, age 85, both hemispheres 56.6
2436 Male, age 74, both hemispheres 44.3
2620 Female, age 94, left hemisphere 38.9
2861 Female, age 67, both hemispheres 36.0
1867 Male, age 76, both hemispheres 29.7
2137 Male, age 80, left hemisphere 29.5
Parahippocampal cortex
nTPM: 40.8
2692 Male, age 74, both hemispheres 55.5
2250 Female, age 67, right hemisphere 46.0
2245 Female, age 91, both hemispheres 42.9
2622 Female, age 67, right hemisphere 42.9
1990 Female, age 91, right hemisphere 42.8
1933 Female, age 85, both hemispheres 41.0
1850 Male, age 80, both hemispheres 36.9
2018 Male, age 76, both hemispheres 36.2
2532 Female, age 72, left hemisphere 32.4
2693 Female, age 94, both hemispheres 31.9
Perirhinal gyrus
nTPM: 31.8
1847 Female, age 91, left hemisphere 38.8
1794 Male, age 80, right hemisphere 33.8
2521 Female, age 94, right hemisphere 32.4
1841 Female, age 85, right hemisphere 29.2
2848 Male, age 76, right hemisphere 24.5
Subiculum
nTPM: 48.4
2729 Female, age 91, right hemisphere 65.4
2619 Male, age 74, both hemispheres 56.4
2438 Female, age 94, left hemisphere 44.5
1901 Male, age 80, both hemispheres 44.1
1977 Female, age 85, both hemispheres 42.8
2042 Male, age 76, both hemispheres 37.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 45.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.2
Samples: 197

Max nTPM: 151.8
Min nTPM: 8.9
Std nTPM: 24.9
Median nTPM: 38.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 151.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 146.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 127.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 119.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 114.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 107.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 105.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 105.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 96.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 95.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 93.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 135.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 135.6
FF:10153-102I9 76 years, female 183.0
FF:10169-103B7 60 years, female 88.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 59.9
Pig sample Sample description nTPM
Subiculum
nTPM: 59.9
Samples: 4

Max nTPM: 68.0
Min nTPM: 46.6
Sample A Female 68.0
Sample B Female 64.6
Sample C Male 60.4
Sample D Male 46.6
Dorsal hippocampus
nTPM: 56.3
Samples: 4

Max nTPM: 69.3
Min nTPM: 43.4
Sample A Female 69.3
Sample B Female 51.9
Sample C Male 60.5
Sample D Male 43.4
Entorhinal cortex
nTPM: 46.3
Samples: 4

Max nTPM: 53.3
Min nTPM: 35.9
Sample A Female 44.8
Sample B Female 51.2
Sample C Male 53.3
Sample D Male 35.9
Ventral hippocampus
nTPM: 58.7
Samples: 4

Max nTPM: 66.1
Min nTPM: 49.8
Sample A Female 57.8
Sample B Female 61.0
Sample C Male 66.1
Sample D Male 49.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 86.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.4
Samples: 4

Max nTPM: 91.3
Min nTPM: 77.6
Sample A Male 86.3
Sample B Male 77.6
Sample C Female 90.3
Sample D Female 91.3
Hippocampal formation
nTPM: 77.4
Samples: 4

Max nTPM: 88.3
Min nTPM: 70.2
Sample A Male 88.3
Sample B Male 70.7
Sample C Female 70.2
Sample D Female 80.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
68193021 Antisense, RP_040825_01_A10, Mouse strain C57BL/6J (56 days, male) 3.3

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