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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:328.5 nTPM
FANTOM5:373.9 Scaled Tags Per Million
Pig:37.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014295Antibody CAB016244
Glial cells Not detectedLow
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 328.5
Samples: 246

Max nTPM: 915.8
Min nTPM: 106.1
Std nTPM: 125.8
Median nTPM: 307.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 915.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 805.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 798.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 784.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 748.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 715.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 640.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 633.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 631.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 606.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 604.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 584.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 582.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 564.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 561.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 514.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 511.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 510.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 507.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 489.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 480.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 478.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 471.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 457.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 453.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 450.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 449.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 446.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 445.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 444.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 443.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 442.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 442.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 431.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 430.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 430.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 430.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 428.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 418.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 417.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 416.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 416.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 414.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 412.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 411.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 411.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 410.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 405.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 401.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 401.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 398.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 397.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 394.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 393.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 393.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 393.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 392.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 389.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 388.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 388.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 387.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 384.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 383.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 381.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 380.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 380.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 377.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 377.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 375.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 374.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 371.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 370.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 369.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 368.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 368.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 368.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 367.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 367.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 367.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 366.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 365.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 362.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 360.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 359.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 359.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 358.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 358.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 357.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 355.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 355.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 352.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 351.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 350.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 350.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 348.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 346.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 344.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 341.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 341.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 340.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 339.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 338.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 334.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 332.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 331.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 331.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 331.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 331.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 329.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 325.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 324.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 323.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 323.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 322.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 318.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 318.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 318.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 314.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 312.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 311.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 310.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 308.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 307.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 307.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 306.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 305.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 303.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 303.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 300.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 299.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 296.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 296.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 296.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 293.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 292.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 292.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 291.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 291.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 290.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 290.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 289.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 288.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 287.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 287.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 285.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 284.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 283.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 281.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 280.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 280.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 277.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 277.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 276.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 275.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 274.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 274.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 273.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 273.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 271.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 268.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 266.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 266.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 266.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 266.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 265.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 264.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 263.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 263.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 263.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 261.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 260.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 260.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 259.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 256.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 256.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 256.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 255.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 255.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 251.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 250.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 249.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 245.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 244.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 244.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 244.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 244.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 241.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 239.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 237.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 237.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 234.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 233.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 232.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 230.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 230.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 230.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 228.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 226.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 224.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 222.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 221.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 221.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 220.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 219.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 216.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 216.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 215.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 213.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 213.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 212.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 211.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 210.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 209.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 209.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 207.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 205.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 203.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 203.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 203.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 201.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 200.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 200.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 196.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 194.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 192.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 191.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 191.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 186.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 184.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 183.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 181.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 177.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 175.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 175.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 166.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 159.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 158.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 152.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 146.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 146.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 146.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 145.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 145.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 126.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 106.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

374.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 374.0
FF:10164-103B2 76 years, female 373.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.7
Pig sample Sample description nTPM
Caudate
nTPM: 37.7
Samples: 4

Max nTPM: 43.6
Min nTPM: 32.6
Sample A Female 40.9
Sample B Female 33.6
Sample C Male 43.6
Sample D Male 32.6

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