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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:167.5 nTPM
HPA:159.3 nTPM
GTEx:167.5 nTPM
FANTOM5:477.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014295Antibody CAB016244
Glandular cells HighHigh



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.3
overview
Male, age 65
Small intestine sample 232
nTPM: 140.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 167.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 206.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 123.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 167.5
Samples: 187

Max nTPM: 386.9
Min nTPM: 52.2
Std nTPM: 68.5
Median nTPM: 153.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 386.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 375.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 355.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 339.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 338.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 337.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 333.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 332.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 326.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 294.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 290.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 289.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 284.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 283.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 282.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 280.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 274.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 272.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 265.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 265.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 265.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 254.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 252.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 237.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 236.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 234.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 233.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 231.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 230.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 227.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 227.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 227.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 225.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 224.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 222.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 221.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 221.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 220.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 220.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 219.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 218.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 217.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 214.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 212.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 211.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 211.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 210.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 209.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 204.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 204.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 203.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 202.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 199.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 199.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 197.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 193.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 193.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 188.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 188.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 188.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 186.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 185.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 185.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 184.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 181.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 181.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 180.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 179.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 178.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 177.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 176.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 175.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 174.2
GTEX-1192X-2526-SM-59868 50-59 years, male 173.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 173.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 172.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 171.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 171.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 170.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 169.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 167.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 166.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 164.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 164.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 163.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 163.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 163.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 163.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 163.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 158.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 158.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 154.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 153.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 153.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 152.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 148.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 148.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 148.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 148.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 148.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 148.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 147.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 147.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 145.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 144.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 143.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 142.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 142.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 141.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 141.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 141.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 140.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 139.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 139.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 137.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 137.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 137.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 136.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 134.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 134.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 133.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 132.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 131.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 131.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 131.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 130.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 130.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 128.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 127.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 126.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 126.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 125.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 124.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 122.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 121.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 121.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 120.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 119.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 118.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 117.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 114.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 113.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 112.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 111.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 110.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 110.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 110.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 110.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 110.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 109.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 108.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 107.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 106.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 105.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 105.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 105.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 103.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 102.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 98.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 98.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 98.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 98.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 97.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 96.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 96.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 95.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 95.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 95.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 90.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 90.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 89.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 86.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 83.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 83.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 82.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 81.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 78.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 77.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 76.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 74.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 69.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 69.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 64.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 63.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 62.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 57.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 52.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

477.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 477.9
FF:10024-101D6 15,40,85 years, mixed 477.9

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