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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

60.299
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:12.2 nTPM
HPA Brain:24.5 nTPM
GTEx:12.2 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:18.7 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA035117
Amygdala mean intensity 60.299
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 35.449
Basal medial amygdaloid nucleus 48.578
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 39.485
Cortical amygdala 36.697
Central amygdala 53.022
Medial amygdaloid nucleus 58.023

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.5
Sample id Sample description nTPM
Amygdala
nTPM: 24.2
2695 Female, age 67, right hemisphere 26.4
2517 Female, age 94, left hemisphere 25.2
2514 Male, age 75, right hemisphere 24.3
2814 Male, age 76, right hemisphere 22.9
1987 Female, age 91, left hemisphere 22.3
Basal amygdala
nTPM: 21.0
2827 Female, age 67, right hemisphere 24.1
2609 Male, age 75, right hemisphere 22.4
1955 Male, age 76, both hemispheres 20.7
2685 Female, age 94, left hemisphere 20.3
2110 Male, age 80, left hemisphere 20.2
2243 Female, age 91, right hemisphere 18.1
Central amygdala
nTPM: 23.2
2826 Female, age 94, left hemisphere 27.3
2515 Male, age 75, right hemisphere 24.5
2701 Female, age 91, right hemisphere 23.2
1905 Male, age 76, both hemispheres 21.2
2239 Male, age 80, left hemisphere 19.6
Corticomedial amygdala
nTPM: 19.0
2428 Male, age 75, right hemisphere 22.6
2535 Female, age 67, right hemisphere 20.8
2240 Male, age 76, both hemispheres 18.8
2242 Female, age 91, right hemisphere 18.1
2429 Female, age 94, left hemisphere 17.5
2829 Male, age 80, left hemisphere 16.3
Lateral amygdala
nTPM: 24.5
2830 Female, age 67, right hemisphere 27.8
2516 Male, age 75, right hemisphere 26.1
2255 Female, age 91, right hemisphere 24.9
2534 Female, age 94, left hemisphere 24.8
2256 Male, age 80, left hemisphere 22.8
1883 Male, age 76, both hemispheres 20.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 12.2
Samples: 152

Max nTPM: 39.8
Min nTPM: 2.1
Std nTPM: 4.5
Median nTPM: 11.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 39.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 36.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 28.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 24.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 22.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 20.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 19.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 18.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 18.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 17.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 17.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 16.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 16.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 16.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 16.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 16.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 16.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 15.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 15.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 15.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 15.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 15.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 15.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 15.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 14.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 14.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 14.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 14.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 14.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 14.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 14.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 14.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 14.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 14.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 14.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 14.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 13.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 13.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 13.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 13.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 13.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 13.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 13.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 13.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 13.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 12.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 12.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 12.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 12.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 12.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 12.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 12.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 12.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 12.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 12.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 12.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 12.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 12.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 12.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 11.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 11.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 11.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 11.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 11.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 11.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 11.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 11.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 11.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 11.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 11.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 11.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 11.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 11.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 11.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 11.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 11.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 11.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 11.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 11.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 10.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 10.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 10.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 10.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 10.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 10.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 10.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 10.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 10.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 10.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 10.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 10.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 10.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 10.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 10.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 10.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 10.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 9.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 9.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 9.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 9.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 9.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 9.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 9.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 9.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 9.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 9.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 9.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 9.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 9.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 9.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 9.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 9.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 9.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 9.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 9.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 9.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 8.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 8.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 8.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 8.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 8.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 8.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 8.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 8.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 8.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 8.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 8.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 8.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 8.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 8.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 8.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 8.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 8.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 8.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 8.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 8.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 8.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 7.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 7.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 7.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 7.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.3
FF:10151-102I7 76 years, female 15.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.2
Pig sample Sample description nTPM
Amygdala
nTPM: 24.2
Samples: 4

Max nTPM: 33.3
Min nTPM: 16.9
Sample A Female 24.0
Sample B Female 33.3
Sample C Male 22.6
Sample D Male 16.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 18.7
Samples: 4

Max nTPM: 20.3
Min nTPM: 17.1
Sample A Male 17.1
Sample B Male 20.3
Sample C Female 18.6
Sample D Female 18.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
69116329 Antisense, RP_050317_02_E03, Mouse strain C57BL/6J (56 days, male) 0.4

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