MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.2 nTPM
HPA Brain:193.4 nTPM
GTEx:153.2 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:179.6 nTPM
Mouse:84.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 193.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 169.2
2828 Female, age 72, unknown 205.2
2586 Male, age 75, left hemisphere 192.5
1833 Male, age 53, unknown 187.5
2666 Male, age 74, left hemisphere 182.9
2411 Female, age 72, unknown 182.5
1830 Male, age 51, unknown 170.5
2019 Male, age 18, unknown 170.4
1827 Male, age 72, unknown 154.5
1870 Female, age 42, unknown 152.2
2219 Male, age 76, both hemispheres 94.0
Dorsal raphe nucleus
nTPM: 140.5
2750 Male, age 76, both hemispheres 170.7
2016 Female, age 72, unknown 157.1
1828 Male, age 53, unknown 134.7
2298 Female, age 72, unknown 123.7
2047 Male, age 72, unknown 116.1
Inferior colliculus
nTPM: 120.1
1848 Female, age 42, unknown 129.6
2849 Male, age 72, unknown 124.9
1890 Male, age 53, unknown 113.1
2097 Female, age 72, unknown 112.7
Median raphe nucleus
nTPM: 111.7
2220 Male, age 76, midline 111.7
Periaquaductal grey, anterior
nTPM: 147.1
2502 Female, age 75, unknown 171.6
1795 Male, age 51, unknown 137.8
1947 Male, age 18, unknown 131.8
Periaquaductal grey, dorsal
nTPM: 124.3
2464 Female, age 72, unknown 143.2
2850 Male, age 76, both hemispheres 136.1
1831 Male, age 72, unknown 114.9
1840 Male, age 53, unknown 103.1
Periaquaductal grey, lateral
nTPM: 123.1
2140 Male, age 76, both hemispheres 134.0
2053 Male, age 18, unknown 120.5
2272 Male, age 74, both hemispheres 114.8
Pretectal area
nTPM: 129.1
2316 Male, age 76, right hemisphere 160.3
1815 Male, age 53, unknown 158.6
1817 Female, age 42, unknown 140.5
2007 Male, age 72, unknown 137.7
2825 Male, age 18, unknown 129.6
2407 Male, age 75, both hemispheres 127.6
2667 Female, age 75, unknown 126.0
1816 Male, age 51, unknown 123.9
2224 Female, age 72, unknown 109.5
2273 Male, age 74, both hemispheres 104.3
1944 Female, age 72, unknown 101.8
Red nucleus
nTPM: 193.4
1904 Male, age 53, unknown 226.6
2769 Male, age 72, unknown 220.4
2503 Female, age 72, unknown 218.9
2227 Male, age 72, unknown 213.3
2785 Male, age 18, unknown 200.4
2823 Male, age 76, right hemisphere 193.4
1821 Female, age 72, unknown 190.3
2588 Male, age 74, left hemisphere 180.3
1865 Male, age 51, unknown 174.4
2725 Female, age 75, unknown 172.5
1954 Female, age 42, unknown 170.2
2584 Male, age 75, left hemisphere 159.9
Substantia nigra
nTPM: 131.5
1851 Male, age 51, unknown 158.2
2590 Female, age 75, unknown 143.7
2699 Male, age 18, unknown 142.9
1889 Female, age 72, unknown 137.2
2583 Male, age 75, right hemisphere 134.8
1916 Female, age 42, unknown 131.0
2409 Female, age 72, unknown 129.9
2665 Male, age 74, both hemispheres 126.5
1941 Male, age 53, unknown 111.8
2241 Male, age 72, unknown 98.6
Superior colliculus
nTPM: 151.7
1995 Male, age 72, unknown 192.1
2664 Male, age 75, both hemispheres 161.1
1913 Female, age 42, unknown 159.6
2587 Male, age 74, left hemisphere 157.2
1796 Male, age 53, unknown 154.7
1895 Male, age 76, right hemisphere 151.6
1839 Male, age 51, unknown 149.1
2261 Male, age 18, unknown 143.1
2668 Female, age 75, unknown 131.4
2087 Female, age 72, unknown 117.2
Ventral tegmental area
nTPM: 139.9
2410 Female, age 72, unknown 188.7
1915 Female, age 42, unknown 135.9
1942 Male, age 51, unknown 135.0
2223 Female, age 72, unknown 132.6
2021 Male, age 53, unknown 124.1
2218 Male, age 76, both hemispheres 123.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 153.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.2
Samples: 139

Max nTPM: 442.0
Min nTPM: 49.9
Std nTPM: 63.7
Median nTPM: 141.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 442.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 425.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 352.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 311.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 285.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 273.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 267.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 263.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 263.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 254.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 242.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 179.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 170.5
Samples: 4

Max nTPM: 209.2
Min nTPM: 121.9
Sample A Female 209.2
Sample B Female 121.9
Sample C Male 152.7
Sample D Male 198.3
Midbrain
nTPM: 177.7
Samples: 4

Max nTPM: 233.1
Min nTPM: 120.4
Sample A Female 233.1
Sample B Female 215.1
Sample C Male 142.2
Sample D Male 120.4
Periaqueductal gray
nTPM: 179.7
Samples: 3

Max nTPM: 206.8
Min nTPM: 154.8
Sample B Female 206.8
Sample C Male 177.4
Sample D Male 154.8
Superior colliculi
nTPM: 159.8
Samples: 4

Max nTPM: 199.1
Min nTPM: 87.6
Sample A Female 199.1
Sample B Female 87.6
Sample C Male 166.9
Sample D Male 185.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 84.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.6
Samples: 4

Max nTPM: 112.8
Min nTPM: 63.1
Sample A Male 112.8
Sample B Male 83.5
Sample C Female 63.1
Sample D Female 79.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68269063 Antisense, RP_041208_01_H02, Mouse strain C57BL/6J (56 days, male) 0.6

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