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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:143.1 nTPM
HPA Brain:145.9 nTPM
GTEx:143.1 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:223.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 130.5
2565 Male, age 75, midline 161.0
1981 Female, age 72, midline 137.0
2194 Female, age 79, both hemispheres 128.0
2816 Male, age 47, midline 120.0
2048 Male, age 55, midline 106.4
Cervical spinal cord, dorsal horn
nTPM: 116.5
2296 Male, age 66, both hemispheres 139.1
2173 Female, age 72, unknown 135.9
1877 Male, age 55, unknown 118.7
2069 Male, age 47, both hemispheres 116.2
2297 Male, age 75, both hemispheres 100.9
2721 Male, age 90, both hemispheres 88.0
Cervical spinal cord, ventral horn
nTPM: 145.9
2809 Male, age 90, both hemispheres 171.8
2480 Male, age 75, both hemispheres 171.2
2098 Female, age 72, unknown 144.2
2295 Male, age 66, both hemispheres 135.4
2068 Male, age 55, unknown 132.0
2820 Female, age 79, both hemispheres 121.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 143.1
Samples: 159

Max nTPM: 297.4
Min nTPM: 47.4
Std nTPM: 47.2
Median nTPM: 135.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 297.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 285.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 284.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 272.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 269.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 267.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 250.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 226.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 224.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 220.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 214.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 213.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 212.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 211.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 208.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 205.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 203.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 203.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 202.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 197.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 196.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 195.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 193.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 192.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 191.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 189.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 184.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 182.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 181.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 179.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 176.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 176.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 171.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 171.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 171.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 171.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 171.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 171.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 169.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 169.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 168.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 167.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 164.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 164.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 163.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 163.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 161.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 158.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 158.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 158.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 156.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 156.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 155.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 155.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 155.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 154.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 154.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 152.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 151.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 151.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 150.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 150.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 148.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 148.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 148.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 147.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 144.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 142.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 142.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 141.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 141.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 139.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 136.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 136.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 135.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 135.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 133.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 133.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 133.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 132.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 132.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 132.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 131.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 131.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 131.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 130.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 130.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 129.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 127.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 125.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 124.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 124.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 123.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 121.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 121.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 119.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 118.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 118.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 117.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 117.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 117.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 116.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 115.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 113.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 112.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 112.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 111.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 110.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 108.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 107.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 107.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 107.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 107.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 105.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 105.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 105.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 104.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 103.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 103.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 103.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 101.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 101.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 100.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 100.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 100.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 100.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 91.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 90.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 89.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 89.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 88.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 86.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 85.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 81.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 76.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 76.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 75.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 75.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 47.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 18.0
FF:10159-103A6 76 years, female 19.2
FF:10181-103D1 60 years, female 16.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.1
Samples: 4

Max nTPM: 191.7
Min nTPM: 155.9
Sample A Female 155.9
Sample B Female 173.8
Sample C Male 162.9
Sample D Male 191.7
Ventral spinal cord
nTPM: 223.7
Samples: 4

Max nTPM: 237.3
Min nTPM: 199.8
Sample A Female 199.8
Sample B Female 236.5
Sample C Male 221.1
Sample D Male 237.3

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