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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:74.6 nTPM
HPA Brain:26.6 nTPM
GTEx:74.6 nTPM
FANTOM5:74.9 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:208.1 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.6
Sample id Sample description nTPM
Amygdala
nTPM: 26.6
2514 Male, age 75, right hemisphere 30.8
1987 Female, age 91, left hemisphere 27.7
2814 Male, age 76, right hemisphere 26.8
2517 Female, age 94, left hemisphere 24.5
2695 Female, age 67, right hemisphere 23.1
Basal amygdala
nTPM: 22.8
2110 Male, age 80, left hemisphere 28.4
2609 Male, age 75, right hemisphere 24.8
1955 Male, age 76, both hemispheres 23.4
2243 Female, age 91, right hemisphere 21.9
2685 Female, age 94, left hemisphere 21.7
2827 Female, age 67, right hemisphere 16.5
Central amygdala
nTPM: 23.9
1905 Male, age 76, both hemispheres 28.3
2826 Female, age 94, left hemisphere 24.0
2239 Male, age 80, left hemisphere 23.5
2515 Male, age 75, right hemisphere 22.4
2701 Female, age 91, right hemisphere 21.3
Corticomedial amygdala
nTPM: 23.8
2829 Male, age 80, left hemisphere 30.1
2429 Female, age 94, left hemisphere 25.7
2242 Female, age 91, right hemisphere 25.2
2428 Male, age 75, right hemisphere 21.9
2535 Female, age 67, right hemisphere 21.4
2240 Male, age 76, both hemispheres 18.5
Lateral amygdala
nTPM: 22.4
1883 Male, age 76, both hemispheres 28.8
2534 Female, age 94, left hemisphere 26.5
2516 Male, age 75, right hemisphere 24.2
2256 Male, age 80, left hemisphere 20.9
2255 Female, age 91, right hemisphere 17.1
2830 Female, age 67, right hemisphere 16.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.6
Samples: 152

Max nTPM: 250.6
Min nTPM: 32.4
Std nTPM: 31.6
Median nTPM: 66.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 250.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 215.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 190.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 177.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 155.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 152.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 141.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 124.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 121.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 114.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 109.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 108.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 105.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 105.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 99.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 98.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 96.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 94.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 93.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 93.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 91.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 90.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 89.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 88.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 88.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 86.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 86.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 86.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 85.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 85.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 85.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 84.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 82.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 82.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 80.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 79.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 79.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 79.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 78.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 77.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 76.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 75.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 75.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 75.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 73.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 72.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 72.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 71.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 71.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 71.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 69.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 69.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 68.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 68.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 66.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 66.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 66.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 65.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 65.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 65.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 65.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 65.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 64.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 62.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 62.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 61.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 61.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 61.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 60.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 60.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 58.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 58.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 57.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 56.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 56.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 55.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 55.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 55.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 55.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 55.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 54.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 54.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 54.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 54.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 53.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 52.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 51.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 51.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 50.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 50.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 50.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 48.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 47.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 47.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 47.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 45.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 44.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 44.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 44.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 41.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 40.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 38.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 32.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 74.9
FF:10151-102I7 76 years, female 74.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.8
Pig sample Sample description nTPM
Amygdala
nTPM: 55.9
Samples: 4

Max nTPM: 75.8
Min nTPM: 39.6
Sample A Female 75.8
Sample B Female 57.3
Sample C Male 39.6
Sample D Male 50.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 208.1
Samples: 4

Max nTPM: 213.8
Min nTPM: 195.9
Sample A Male 213.3
Sample B Male 209.5
Sample C Female 213.8
Sample D Female 195.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
70295894 Antisense, RP_050531_04_C01, Mouse strain C57BL/6J (56 days, male) 0.3

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