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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.7 nTPM
GTEx:54.7 nTPM
FANTOM5:47.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA062016
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 54.7
Samples: 156

Max nTPM: 114.6
Min nTPM: 30.3
Std nTPM: 16.0
Median nTPM: 53.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 114.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 103.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 96.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 93.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 91.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 90.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 86.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 84.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 84.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 82.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 80.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 78.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 78.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 78.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 77.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 74.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 74.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 74.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 73.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 71.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 71.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 70.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 70.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 69.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 69.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 68.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 67.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 67.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 67.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 66.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 66.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 65.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 64.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 64.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 64.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 64.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 63.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 63.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 63.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 63.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 63.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 62.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 62.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 62.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 62.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 62.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 62.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 61.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 61.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 61.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 60.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 60.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 60.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 59.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 59.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 59.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 59.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 59.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 59.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 58.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 58.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 58.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 57.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 57.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 57.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 57.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 56.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 56.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 56.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 56.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 56.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 56.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 55.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 54.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 53.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 53.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 53.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 53.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 53.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 52.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 52.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 52.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 52.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 52.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 52.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 51.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 51.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 51.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 51.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 50.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 49.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 49.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 49.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 48.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 48.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 48.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 47.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 47.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 47.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 47.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 46.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 46.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 46.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 46.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 46.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 45.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 45.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 44.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 44.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 43.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 43.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 43.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 43.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 43.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 42.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 42.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 42.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 42.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 42.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 42.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 41.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 41.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 41.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 41.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 41.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 41.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 40.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 38.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 38.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 38.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 38.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 37.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 37.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 37.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 36.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 36.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 35.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 35.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 35.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 35.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 34.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 34.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 34.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 33.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 33.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 33.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 33.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 33.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 32.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 32.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 31.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 31.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 31.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 30.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 30.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 30.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 47.0
FF:10204-103F6 68 years, female 47.0

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