MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:56.4 nTPM
GTEx:32.8 nTPM
FANTOM5:116.3 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:24.7 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
1870 Female, age 42, unknown 60.0
2411 Female, age 72, unknown 56.9
1827 Male, age 72, unknown 56.0
1830 Male, age 51, unknown 55.8
2019 Male, age 18, unknown 54.2
2219 Male, age 76, both hemispheres 53.9
1833 Male, age 53, unknown 52.6
2828 Female, age 72, unknown 50.1
2666 Male, age 74, left hemisphere 49.0
2586 Male, age 75, left hemisphere 46.0
Dorsal raphe nucleus
nTPM: 51.2
2047 Male, age 72, unknown 52.6
2750 Male, age 76, both hemispheres 52.2
2298 Female, age 72, unknown 51.1
1828 Male, age 53, unknown 50.4
2016 Female, age 72, unknown 49.6
Inferior colliculus
nTPM: 49.5
2849 Male, age 72, unknown 50.2
2097 Female, age 72, unknown 50.0
1890 Male, age 53, unknown 49.9
1848 Female, age 42, unknown 48.0
Median raphe nucleus
nTPM: 53.5
2220 Male, age 76, midline 53.5
Periaquaductal grey, anterior
nTPM: 49.9
1947 Male, age 18, unknown 52.8
2502 Female, age 75, unknown 52.5
1795 Male, age 51, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 47.0
1840 Male, age 53, unknown 48.8
2464 Female, age 72, unknown 47.3
1831 Male, age 72, unknown 46.2
2850 Male, age 76, both hemispheres 45.8
Periaquaductal grey, lateral
nTPM: 45.8
2053 Male, age 18, unknown 51.1
2140 Male, age 76, both hemispheres 45.0
2272 Male, age 74, both hemispheres 41.4
Pretectal area
nTPM: 51.1
2007 Male, age 72, unknown 54.3
1944 Female, age 72, unknown 54.2
1815 Male, age 53, unknown 53.7
1817 Female, age 42, unknown 53.4
1816 Male, age 51, unknown 51.6
2825 Male, age 18, unknown 50.2
2667 Female, age 75, unknown 49.9
2407 Male, age 75, both hemispheres 49.7
2224 Female, age 72, unknown 49.6
2273 Male, age 74, both hemispheres 48.3
2316 Male, age 76, right hemisphere 46.7
Red nucleus
nTPM: 53.9
1821 Female, age 72, unknown 61.5
1954 Female, age 42, unknown 60.1
1865 Male, age 51, unknown 58.2
2503 Female, age 72, unknown 57.4
2725 Female, age 75, unknown 54.0
1904 Male, age 53, unknown 53.6
2823 Male, age 76, right hemisphere 52.9
2588 Male, age 74, left hemisphere 51.7
2769 Male, age 72, unknown 51.0
2785 Male, age 18, unknown 49.1
2227 Male, age 72, unknown 48.7
2584 Male, age 75, left hemisphere 48.3
Substantia nigra
nTPM: 56.4
1916 Female, age 42, unknown 63.5
2241 Male, age 72, unknown 60.3
2409 Female, age 72, unknown 59.7
1851 Male, age 51, unknown 58.2
1889 Female, age 72, unknown 57.0
1941 Male, age 53, unknown 56.7
2665 Male, age 74, both hemispheres 56.2
2699 Male, age 18, unknown 52.3
2583 Male, age 75, right hemisphere 50.1
2590 Female, age 75, unknown 49.7
Superior colliculus
nTPM: 50.5
2668 Female, age 75, unknown 54.9
1895 Male, age 76, right hemisphere 54.7
2587 Male, age 74, left hemisphere 53.0
1913 Female, age 42, unknown 52.1
2261 Male, age 18, unknown 49.9
1796 Male, age 53, unknown 49.6
1839 Male, age 51, unknown 48.6
1995 Male, age 72, unknown 47.7
2664 Male, age 75, both hemispheres 47.5
2087 Female, age 72, unknown 46.9
Ventral tegmental area
nTPM: 52.6
1915 Female, age 42, unknown 56.3
2410 Female, age 72, unknown 54.4
2218 Male, age 76, both hemispheres 52.7
1942 Male, age 51, unknown 51.4
2223 Female, age 72, unknown 51.3
2021 Male, age 53, unknown 49.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 139

Max nTPM: 93.2
Min nTPM: 15.2
Std nTPM: 11.3
Median nTPM: 30.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 93.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 89.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 79.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 66.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 54.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 49.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 46.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.3
FF:10158-103A5 76 years, female 116.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.6
Samples: 4

Max nTPM: 49.5
Min nTPM: 36.6
Sample A Female 49.5
Sample B Female 36.6
Sample C Male 49.0
Sample D Male 47.3
Midbrain
nTPM: 55.3
Samples: 4

Max nTPM: 76.2
Min nTPM: 39.3
Sample A Female 76.2
Sample B Female 48.8
Sample C Male 56.8
Sample D Male 39.3
Periaqueductal gray
nTPM: 45.9
Samples: 3

Max nTPM: 47.0
Min nTPM: 43.8
Sample B Female 46.8
Sample C Male 47.0
Sample D Male 43.8
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 51.6
Min nTPM: 25.3
Sample A Female 38.1
Sample B Female 25.3
Sample C Male 51.6
Sample D Male 44.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.9
Sample A Male 22.9
Sample B Male 24.8
Sample C Female 26.9
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
69080005 Antisense, RP_050324_01_C05, Mouse strain C57BL/6J (56 days, male) 6.0

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