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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:223.8 nTPM
FANTOM5:224.7 Scaled Tags Per Million
Pig:89.5 nTPM
Mouse:19.3 nTPM
Allen mouse:0.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 149.0
2032 Female, age 42, unknown 164.1
2497 Male, age 66, unknown 161.8
2396 Male, age 61, right hemisphere 120.9
Centromedial thalamic nucleus
nTPM: 223.8
2279 Female, age 85, left hemisphere 296.7
2401 Male, age 76, right hemisphere 150.9
Habenula
nTPM: 82.7
2276 Male, age 66, unknown 93.2
2203 Male, age 61, left hemisphere 81.4
2252 Male, age 62, unknown 79.4
1957 Male, age 80, both hemispheres 76.8
Lateral geniculate body
nTPM: 154.8
2659 Male, age 66, unknown 186.3
2841 Male, age 80, both hemispheres 186.0
2575 Female, age 94, right hemisphere 179.3
2857 Male, age 74, right hemisphere 176.8
2035 Female, age 72, unknown 163.1
2399 Male, age 61, left hemisphere 131.6
1953 Male, age 62, unknown 130.8
2106 Female, age 67, right hemisphere 84.1
Lateral thalamic nuclei
nTPM: 162.3
2661 Female, age 72, unknown 213.8
2577 Male, age 74, both hemispheres 200.5
2573 Female, age 94, left hemisphere 159.6
2765 Female, age 67, both hemispheres 123.1
1903 Male, age 76, left hemisphere 114.4
Medial dorsal thalamic nucleus
nTPM: 122.2
2660 Female, age 72, unknown 223.4
2576 Male, age 74, both hemispheres 168.9
2572 Female, age 94, right hemisphere 151.5
1859 Male, age 76, both hemispheres 129.9
1930 Female, age 42, unknown 118.6
2492 Male, age 75, right hemisphere 115.2
1810 Male, age 48, unknown 110.5
2039 Female, age 72, unknown 110.2
2498 Male, age 66, unknown 98.2
2283 Male, age 80, right hemisphere 97.2
2402 Female, age 67, both hemispheres 90.8
2026 Male, age 62, unknown 88.6
1971 Male, age 61, right hemisphere 86.2
Medial geniculate body
nTPM: 157.2
2571 Male, age 75, right hemisphere 267.0
2217 Female, age 72, unknown 177.0
2650 Female, age 94, left hemisphere 152.1
2657 Male, age 74, right hemisphere 150.8
2207 Male, age 80, right hemisphere 143.3
2049 Male, age 76, both hemispheres 111.7
1811 Female, age 42, unknown 98.7
Nucleus reuniens
nTPM: 205.2
2210 Female, age 85, left hemisphere 370.7
2205 Male, age 80, left hemisphere 175.8
2212 Female, age 67, left hemisphere 69.0
Nucleus rhomboideus
nTPM: 189.4
2280 Female, age 85, left hemisphere 394.8
2213 Female, age 67, left hemisphere 87.5
2206 Male, age 80, both hemispheres 86.0
Posterior thalamic nucleus
nTPM: 156.4
2649 Female, age 94, both hemispheres 229.0
2655 Male, age 74, right hemisphere 190.0
2266 Male, age 76, right hemisphere 116.8
2495 Female, age 67, right hemisphere 89.8
Pulvinar
nTPM: 138.3
1899 Female, age 42, unknown 162.8
2724 Male, age 74, right hemisphere 159.3
2398 Male, age 61, left hemisphere 149.2
2499 Male, age 66, unknown 142.4
1932 Male, age 80, right hemisphere 139.4
2582 Female, age 72, unknown 132.3
1972 Male, age 62, unknown 130.6
1929 Male, age 48, unknown 128.8
2214 Male, age 76, right hemisphere 128.6
2496 Female, age 67, right hemisphere 109.3
Subthalamic nucleus
nTPM: 184.8
2056 Female, age 72, unknown 246.2
2124 Male, age 62, unknown 215.7
2282 Male, age 61, both hemispheres 209.4
2216 Male, age 48, unknown 207.9
2658 Male, age 74, both hemispheres 202.0
2779 Female, age 42, unknown 165.8
2275 Male, age 66, unknown 150.3
2406 Female, age 72, unknown 81.6
Ventral posterolateral thalamic nucleus
nTPM: 166.0
2581 Female, age 72, unknown 239.4
2578 Male, age 74, both hemispheres 207.8
2740 Male, age 76, right hemisphere 173.2
2570 Male, age 75, right hemisphere 158.6
2397 Male, age 61, right hemisphere 118.2
2197 Male, age 80, both hemispheres 99.0
Ventral posteromedial thalamic nucleus
nTPM: 144.0
2653 Male, age 74, both hemispheres 197.3
2127 Male, age 76, right hemisphere 190.5
2281 Male, age 75, right hemisphere 134.2
2758 Male, age 80, both hemispheres 104.2
2202 Male, age 61, left hemisphere 94.0
Ventral thalamic nuclei
nTPM: 168.9
2858 Female, age 72, unknown 227.3
2652 Male, age 74, left hemisphere 203.6
2291 Female, age 72, unknown 198.4
2580 Male, age 66, unknown 190.3
1845 Male, age 48, unknown 159.6
2204 Male, age 80, both hemispheres 141.5
1860 Male, age 76, both hemispheres 137.0
1912 Female, age 42, unknown 131.1
2285 Male, age 62, unknown 130.9
Zona incerta
nTPM: 167.8
2663 Female, age 72, unknown 200.0
2822 Male, age 74, right hemisphere 199.3
2403 Male, age 62, unknown 174.2
2215 Male, age 66, unknown 159.2
2208 Male, age 80, right hemisphere 106.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 224.7
FF:10154-103A1 76 years, female 224.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.5
Pig sample Sample description nTPM
Thalamus
nTPM: 89.5
Samples: 4

Max nTPM: 132.9
Min nTPM: 64.2
Sample A Female 64.2
Sample B Female 72.6
Sample C Male 88.3
Sample D Male 132.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 19.3
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.9
Sample A Male 23.0
Sample B Male 18.2
Sample C Female 18.1
Sample D Female 17.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.7
69202490 Antisense, RP_050324_03_G04, Mouse strain C57BL/6J (56 days, male) 0.7

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