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ATP5F1C
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:200.1 nTPM
HPA:200.1 nTPM
GTEx:117.5 nTPM
FANTOM5:515.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA060949
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.1
overview
Male, age 65
Small intestine sample 232
nTPM: 212.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 204.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 168.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 215.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 117.5
Samples: 187

Max nTPM: 233.9
Min nTPM: 37.9
Std nTPM: 42.2
Median nTPM: 108.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 233.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 222.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 220.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 219.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 211.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 207.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 205.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 204.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 203.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 199.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 199.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 198.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 197.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 191.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 190.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 190.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 188.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 187.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 182.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 181.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 179.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 177.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 175.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 169.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 168.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 165.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 161.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 160.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 158.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 158.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 157.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 156.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 156.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 155.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 155.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 155.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 154.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 153.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 153.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 152.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 152.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 150.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 150.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 149.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 149.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 148.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 145.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 144.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 143.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 143.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 141.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 139.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 139.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 137.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 137.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 135.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 134.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 134.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 133.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 132.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 130.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 130.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 130.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 129.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 129.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 128.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 128.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 127.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 125.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 124.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 124.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 124.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 123.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 121.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 120.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 119.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 118.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 117.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 117.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 117.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 117.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 116.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 113.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 112.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 112.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 111.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 111.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 111.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 110.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 110.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 110.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 109.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 108.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 108.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 108.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 108.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 107.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 106.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 105.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 105.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 105.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 105.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 104.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 104.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 103.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 103.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 103.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 102.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 102.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 102.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 102.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 101.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 101.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 100.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 100.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 99.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 99.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 99.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 97.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 97.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 96.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 96.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 96.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 95.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 95.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 95.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 95.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 95.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 93.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 92.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 91.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 89.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 88.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 88.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 88.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 86.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 85.4
GTEX-1192X-2526-SM-59868 50-59 years, male 84.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 84.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 83.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 83.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 82.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 82.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 81.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 80.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 80.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 80.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 79.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 78.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 78.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 78.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 78.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 77.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 76.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 74.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 74.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 74.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 74.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 74.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 73.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 72.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 72.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 72.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 72.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 71.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 71.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 71.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 70.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 70.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 69.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 68.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 67.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 67.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 66.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 66.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 66.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 65.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 62.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 56.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 54.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 49.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 49.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 46.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 43.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 42.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 37.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

515.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 515.9
FF:10024-101D6 15,40,85 years, mixed 515.9

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