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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:92.0 nTPM
FANTOM5:139.6 Scaled Tags Per Million
Pig:122.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041488Antibody CAB008656
Glial cells LowLow
Neuronal cells MediumHigh



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 92.0
Samples: 246

Max nTPM: 198.9
Min nTPM: 55.3
Std nTPM: 18.8
Median nTPM: 90.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 198.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 174.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 167.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 162.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 159.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 155.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 145.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 140.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 139.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 131.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 126.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 120.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 120.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 116.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 115.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 112.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 112.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 112.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 112.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 112.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 111.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 111.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 111.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 111.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 109.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 109.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 108.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 108.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 107.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 107.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 106.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 106.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 106.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 106.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 106.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 105.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 105.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 105.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 105.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 104.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 104.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 104.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 103.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 103.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 103.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 102.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 102.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 102.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 102.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 102.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 101.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 101.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 100.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 100.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 100.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 99.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 99.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 99.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 99.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 98.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 98.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 98.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 98.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 97.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 97.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 97.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 96.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 96.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 96.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 96.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 96.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 96.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 95.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 95.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 95.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 95.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 95.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 95.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 95.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 95.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 94.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 94.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 94.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 94.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 94.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 94.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 94.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 94.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 93.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 93.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 93.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 93.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 93.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 93.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 93.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 93.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 92.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 92.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 92.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 92.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 92.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 92.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 92.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 92.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 92.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 92.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 91.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 91.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 91.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 91.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 90.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 90.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 90.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 90.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 90.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 90.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 90.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 90.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 90.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 89.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 89.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 89.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 89.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 89.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 89.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 88.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 88.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 88.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 88.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 88.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 87.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 87.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 87.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 87.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 87.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 87.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 87.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 86.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 86.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 86.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 86.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 86.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 86.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 86.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 85.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 85.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 85.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 85.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 85.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 85.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 85.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 85.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 84.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 84.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 84.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 84.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 83.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 83.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 83.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 83.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 83.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 83.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 83.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 83.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 82.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 82.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 82.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 82.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 82.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 82.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 81.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 81.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 81.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 81.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 81.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 81.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 81.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 81.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 80.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 80.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 80.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 80.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 79.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 79.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 79.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 79.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 79.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 79.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 79.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 79.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 79.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 78.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 78.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 78.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 78.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 78.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 78.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 78.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 78.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 77.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 77.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 77.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 77.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 77.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 77.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 77.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 76.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 76.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 76.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 76.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 75.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 75.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 74.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 74.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 74.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 74.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 74.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 74.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 74.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 74.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 72.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 72.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 72.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 72.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 70.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 70.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 69.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 67.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 67.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 67.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 67.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 66.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 66.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 65.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 62.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 61.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 59.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 59.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 58.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 56.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 55.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 139.6
FF:10164-103B2 76 years, female 139.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.1
Pig sample Sample description nTPM
Caudate
nTPM: 122.1
Samples: 4

Max nTPM: 132.7
Min nTPM: 97.4
Sample A Female 132.7
Sample B Female 125.8
Sample C Male 132.6
Sample D Male 97.4

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