HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:89.3 nTPM
HPA Brain:58.9 nTPM
GTEx:89.3 nTPM
FANTOM5:144.3 Scaled Tags Per Million
Pig:126.5 nTPM
Mouse:112.1 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041488Antibody CAB008656
Glial cells Not detectedLow
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 58.9
Sample id Sample description nTPM
Hippocampus
nTPM: 51.6
1898 Male, age 80, left hemisphere 74.8
1855 Male, age 76, left hemisphere 55.0
1911 Female, age 85, right hemisphere 48.7
2148 Female, age 91, left hemisphere 44.1
2529 Female, age 94, left hemisphere 44.1
2621 Female, age 67, right hemisphere 43.1
Dentate gyrus
nTPM: 49.2
2010 Male, age 76, both hemispheres 62.5
1927 Female, age 91, both hemispheres 61.8
2528 Male, age 74, both hemispheres 52.6
2530 Female, age 94, left hemisphere 44.7
2246 Female, age 85, both hemispheres 44.0
2531 Female, age 67, both hemispheres 29.3
Entorhinal gyrus
nTPM: 44.4
2117 Female, age 91, right hemisphere 56.4
1938 Female, age 85, left hemisphere 55.2
2764 Male, age 80, right hemisphere 44.3
1787 Male, age 76, left hemisphere 44.2
2613 Female, age 94, left hemisphere 35.2
2686 Male, age 75, right hemisphere 31.4
Hippocampus, CA1
nTPM: 58.9
2749 Male, age 80, left hemisphere 89.5
1873 Female, age 85, both hemispheres 62.6
2527 Male, age 74, both hemispheres 54.7
2045 Male, age 76, both hemispheres 43.9
2082 Female, age 91, right hemisphere 43.9
Hippocampus, CA2
nTPM: 57.8
1892 Male, age 76, both hemispheres 74.2
1963 Male, age 80, left hemisphere 73.3
2249 Male, age 74, both hemispheres 70.2
1940 Female, age 85, left hemisphere 47.7
2113 Female, age 91, right hemisphere 42.3
2437 Female, age 94, left hemisphere 39.1
Hippocampus, CA3
nTPM: 53.9
2436 Male, age 74, both hemispheres 81.7
2137 Male, age 80, left hemisphere 63.9
1867 Male, age 76, both hemispheres 60.8
1891 Female, age 85, both hemispheres 52.2
2620 Female, age 94, left hemisphere 37.3
2861 Female, age 67, both hemispheres 27.7
Parahippocampal cortex
nTPM: 45.2
1850 Male, age 80, both hemispheres 56.4
2250 Female, age 67, right hemisphere 53.4
1933 Female, age 85, both hemispheres 50.9
1990 Female, age 91, right hemisphere 49.7
2018 Male, age 76, both hemispheres 45.3
2693 Female, age 94, both hemispheres 44.2
2692 Male, age 74, both hemispheres 41.9
2245 Female, age 91, both hemispheres 41.7
2532 Female, age 72, left hemisphere 35.3
2622 Female, age 67, right hemisphere 32.8
Perirhinal gyrus
nTPM: 52.7
1847 Female, age 91, left hemisphere 61.7
1841 Female, age 85, right hemisphere 57.8
1794 Male, age 80, right hemisphere 54.8
2521 Female, age 94, right hemisphere 47.7
2848 Male, age 76, right hemisphere 41.5
Subiculum
nTPM: 45.9
1901 Male, age 80, both hemispheres 54.0
2729 Female, age 91, right hemisphere 51.4
1977 Female, age 85, both hemispheres 50.1
2042 Male, age 76, both hemispheres 48.5
2619 Male, age 74, both hemispheres 39.0
2438 Female, age 94, left hemisphere 32.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 89.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 89.3
Samples: 197

Max nTPM: 206.6
Min nTPM: 49.7
Std nTPM: 20.5
Median nTPM: 88.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 206.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 152.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 139.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 129.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 127.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 125.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 125.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 124.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 123.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 122.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 120.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 144.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 144.3
FF:10169-103B7 60 years, female 158.9
FF:10153-102I9 76 years, female 129.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 126.5
Pig sample Sample description nTPM
Subiculum
nTPM: 122.9
Samples: 4

Max nTPM: 164.5
Min nTPM: 98.5
Sample A Female 164.5
Sample B Female 126.4
Sample C Male 98.5
Sample D Male 102.1
Dorsal hippocampus
nTPM: 126.5
Samples: 4

Max nTPM: 175.7
Min nTPM: 79.9
Sample A Female 175.7
Sample B Female 126.9
Sample C Male 123.4
Sample D Male 79.9
Entorhinal cortex
nTPM: 110.7
Samples: 4

Max nTPM: 135.1
Min nTPM: 81.0
Sample A Female 125.8
Sample B Female 135.1
Sample C Male 100.8
Sample D Male 81.0
Ventral hippocampus
nTPM: 118.5
Samples: 4

Max nTPM: 145.1
Min nTPM: 106.2
Sample A Female 145.1
Sample B Female 106.3
Sample C Male 116.5
Sample D Male 106.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 112.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 112.1
Samples: 4

Max nTPM: 118.6
Min nTPM: 108.3
Sample A Male 111.1
Sample B Male 108.3
Sample C Female 118.6
Sample D Female 110.4
Hippocampal formation
nTPM: 110.2
Samples: 4

Max nTPM: 127.6
Min nTPM: 97.3
Sample A Male 127.6
Sample B Male 97.3
Sample C Female 104.4
Sample D Female 111.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
70743842 Antisense, RP_050725_01_G04, Mouse strain C57BL/6J (56 days, male) 8.2
633302 Antisense, RP_040907_02_F10, Mouse strain C57BL/6J (56 days, male) 2.1

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