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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:164.7 nTPM
FANTOM5:161.2 Scaled Tags Per Million
Pig:87.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA016464Antibody HPA061664
Glial cells Not detectedNot detected
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 164.7
Samples: 246

Max nTPM: 353.9
Min nTPM: 74.1
Std nTPM: 42.1
Median nTPM: 160.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 353.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 324.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 304.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 289.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 284.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 280.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 265.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 260.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 248.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 248.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 247.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 245.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 244.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 242.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 234.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 229.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 227.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 225.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 224.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 223.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 222.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 220.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 218.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 218.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 216.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 215.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 215.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 215.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 214.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 214.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 213.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 211.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 210.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 209.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 209.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 208.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 207.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 205.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 204.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 203.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 200.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 199.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 198.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 198.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 197.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 197.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 196.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 194.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 193.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 193.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 192.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 192.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 191.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 191.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 190.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 189.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 188.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 187.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 186.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 185.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 184.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 183.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 181.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 181.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 180.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 180.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 179.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 178.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 178.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 178.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 177.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 177.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 176.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 176.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 175.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 174.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 174.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 174.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 173.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 173.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 173.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 173.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 173.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 172.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 172.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 171.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 171.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 171.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 171.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 171.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 171.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 170.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 170.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 170.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 170.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 169.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 169.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 169.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 168.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 168.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 167.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 167.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 167.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 167.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 166.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 165.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 165.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 165.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 164.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 164.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 163.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 163.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 162.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 162.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 161.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 161.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 161.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 161.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 161.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 160.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 160.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 160.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 160.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 160.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 160.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 160.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 159.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 159.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 159.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 158.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 157.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 157.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 156.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 155.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 155.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 155.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 155.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 155.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 154.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 154.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 154.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 152.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 151.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 151.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 151.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 151.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 150.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 149.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 148.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 148.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 148.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 147.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 147.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 147.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 146.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 146.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 146.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 146.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 145.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 145.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 145.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 143.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 143.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 143.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 143.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 143.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 143.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 143.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 142.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 142.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 141.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 141.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 141.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 140.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 140.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 140.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 140.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 140.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 139.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 139.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 138.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 137.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 137.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 137.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 135.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 135.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 135.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 135.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 134.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 134.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 134.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 134.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 134.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 132.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 132.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 131.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 131.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 131.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 130.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 130.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 129.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 129.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 129.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 128.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 128.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 127.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 127.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 126.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 124.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 124.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 123.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 123.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 123.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 122.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 122.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 120.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 120.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 118.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 117.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 117.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 117.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 115.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 114.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 114.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 113.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 113.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 112.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 109.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 108.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 107.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 103.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 101.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 96.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 95.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 94.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 93.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 88.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 86.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 86.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 74.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 161.2
FF:10164-103B2 76 years, female 161.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.2
Pig sample Sample description nTPM
Caudate
nTPM: 87.2
Samples: 4

Max nTPM: 96.6
Min nTPM: 77.7
Sample A Female 86.2
Sample B Female 77.7
Sample C Male 96.6
Sample D Male 88.3

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