We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GHITM
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GHITM
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:129.4 nTPM
HPA:129.4 nTPM
GTEx:97.6 nTPM
FANTOM5:187.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA016464Antibody HPA061664
Glandular cells HighMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.4
overview
Male, age 65
Small intestine sample 232
nTPM: 135.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 135.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 109.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 136.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 97.6
Samples: 187

Max nTPM: 207.0
Min nTPM: 42.8
Std nTPM: 35.8
Median nTPM: 90.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 207.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 206.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 201.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 198.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 184.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 182.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 174.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 174.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 170.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 168.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 167.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 164.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 163.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 162.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 160.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 155.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 151.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 151.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 148.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 148.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 143.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 143.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 143.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 141.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 139.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 139.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 137.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 136.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 133.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 133.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 133.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 131.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 131.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 128.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 126.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 125.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 125.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 124.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 123.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 123.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 122.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 122.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 120.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 120.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 119.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 119.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 116.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 116.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 116.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 116.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 116.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 114.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 114.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 113.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 112.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 111.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 111.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 111.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 110.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 109.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 108.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 107.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 106.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 106.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 105.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 105.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 104.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 103.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 103.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 103.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 100.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 99.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 99.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 99.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 98.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 98.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 98.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 97.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 96.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 96.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 96.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 96.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 95.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 95.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 94.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 94.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 94.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 92.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 92.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 92.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 92.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 91.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 90.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 90.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 90.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 89.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 89.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 89.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 88.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 88.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 88.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 88.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 87.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 87.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 86.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 86.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 85.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 85.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 85.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 85.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 84.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 84.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 84.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 80.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 80.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 79.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 79.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 79.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 79.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 78.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 78.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 78.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 77.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 77.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 77.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 76.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 76.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 75.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 75.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 74.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 73.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 73.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 72.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 72.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 72.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 71.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 71.6
GTEX-1192X-2526-SM-59868 50-59 years, male 71.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 71.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 70.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 70.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 69.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 69.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 68.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 68.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 67.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 66.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 66.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 66.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 65.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 65.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 65.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 64.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 64.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 64.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 62.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 62.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 61.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 61.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 61.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 61.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 60.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 60.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 60.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 60.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 59.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 58.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 58.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 58.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 57.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 57.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 57.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 56.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 56.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 55.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 54.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 53.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 49.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 49.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 49.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 46.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 46.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 43.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 43.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 43.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 42.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

187.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 187.8
FF:10024-101D6 15,40,85 years, mixed 187.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org