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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:52.1 nTPM
HPA Brain:31.4 nTPM
GTEx:52.1 nTPM
FANTOM5:62.2 Scaled Tags Per Million
Pig:65.3 nTPM
Mouse:240.9 nTPM
Allen mouse:13.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.4
Sample id Sample description nTPM
Amygdala
nTPM: 26.8
2814 Male, age 76, right hemisphere 37.9
1987 Female, age 91, left hemisphere 30.2
2517 Female, age 94, left hemisphere 25.7
2514 Male, age 75, right hemisphere 21.7
2695 Female, age 67, right hemisphere 18.5
Basal amygdala
nTPM: 27.4
2685 Female, age 94, left hemisphere 33.7
2110 Male, age 80, left hemisphere 33.2
2243 Female, age 91, right hemisphere 32.1
1955 Male, age 76, both hemispheres 30.4
2827 Female, age 67, right hemisphere 18.6
2609 Male, age 75, right hemisphere 16.6
Central amygdala
nTPM: 28.2
1905 Male, age 76, both hemispheres 31.3
2239 Male, age 80, left hemisphere 30.9
2701 Female, age 91, right hemisphere 27.6
2826 Female, age 94, left hemisphere 26.0
2515 Male, age 75, right hemisphere 25.0
Corticomedial amygdala
nTPM: 31.4
2429 Female, age 94, left hemisphere 39.7
2829 Male, age 80, left hemisphere 38.5
2242 Female, age 91, right hemisphere 34.6
2240 Male, age 76, both hemispheres 33.1
2535 Female, age 67, right hemisphere 24.3
2428 Male, age 75, right hemisphere 18.3
Lateral amygdala
nTPM: 24.8
1883 Male, age 76, both hemispheres 36.2
2534 Female, age 94, left hemisphere 33.7
2255 Female, age 91, right hemisphere 22.5
2516 Male, age 75, right hemisphere 19.7
2256 Male, age 80, left hemisphere 19.5
2830 Female, age 67, right hemisphere 17.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 52.1
Samples: 152

Max nTPM: 141.9
Min nTPM: 10.7
Std nTPM: 26.2
Median nTPM: 49.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 141.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 133.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 130.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 126.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 114.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 103.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 96.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 94.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 91.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 91.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 89.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 84.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 82.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 81.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 80.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 79.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 79.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 78.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 78.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 77.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 76.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 75.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 74.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 74.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 73.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 70.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 68.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 66.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 66.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 65.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 64.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 64.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 63.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 63.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 63.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 61.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 60.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 60.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 60.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 59.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 58.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 56.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 56.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 56.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 56.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 55.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 54.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 53.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 53.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 53.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 52.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 52.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 52.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 52.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 52.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 51.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 50.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 50.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 49.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 46.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 46.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 45.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 45.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 45.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 44.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 43.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 43.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 41.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 41.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 38.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 38.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 37.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 37.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 36.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 36.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 35.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 35.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 34.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 34.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 33.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 33.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 32.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 32.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 32.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 32.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 32.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 31.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 31.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 30.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 30.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 29.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 29.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 28.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 27.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 27.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 26.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 26.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 26.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 26.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 26.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 25.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 25.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 23.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 23.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 23.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 23.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 22.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 22.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 22.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 21.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 21.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 20.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 19.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 19.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 17.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 17.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 16.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 15.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 14.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 13.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 10.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

62.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 62.2
FF:10151-102I7 76 years, female 62.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.3
Pig sample Sample description nTPM
Amygdala
nTPM: 65.3
Samples: 4

Max nTPM: 91.9
Min nTPM: 51.9
Sample A Female 91.9
Sample B Female 51.9
Sample C Male 54.5
Sample D Male 63.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 240.9
Samples: 4

Max nTPM: 267.1
Min nTPM: 218.3
Sample A Male 248.1
Sample B Male 267.1
Sample C Female 218.3
Sample D Female 229.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.8
68269059 Antisense, RP_041208_01_G10, Mouse strain C57BL/6J (56 days, male) 13.8

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