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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:138.6 nTPM
FANTOM5:92.9 Scaled Tags Per Million
Pig:47.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006065
Glial cells High

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.6
Samples: 246

Max nTPM: 295.2
Min nTPM: 48.9
Std nTPM: 40.0
Median nTPM: 133.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 295.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 267.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 265.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 260.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 257.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 248.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 230.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 230.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 228.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 228.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 225.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 225.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 223.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 218.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 217.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 216.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 214.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 204.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 202.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 201.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 201.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 191.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 184.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 183.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 183.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 183.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 180.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 177.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 177.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 177.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 175.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 173.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 173.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 173.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 172.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 172.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 171.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 170.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 170.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 169.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 169.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 168.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 168.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 167.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 166.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 165.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 165.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 164.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 164.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 164.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 163.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 162.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 161.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 161.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 160.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 160.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 159.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 159.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 159.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 159.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 158.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 157.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 157.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 156.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 156.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 155.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 155.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 154.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 154.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 153.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 153.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 153.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 152.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 152.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 152.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 152.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 152.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 151.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 151.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 151.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 151.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 150.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 150.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 150.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 149.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 149.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 148.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 148.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 148.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 148.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 148.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 147.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 145.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 145.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 144.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 144.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 144.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 144.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 142.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 142.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 142.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 141.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 140.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 140.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 140.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 139.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 138.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 138.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 138.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 138.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 137.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 137.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 137.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 136.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 135.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 135.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 135.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 134.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 133.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 133.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 133.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 133.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 133.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 133.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 133.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 132.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 132.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 132.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 132.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 132.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 131.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 130.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 130.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 130.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 130.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 130.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 129.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 129.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 128.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 128.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 127.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 127.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 126.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 126.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 126.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 126.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 125.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 125.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 125.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 123.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 122.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 122.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 122.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 121.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 121.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 121.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 121.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 120.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 120.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 120.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 119.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 118.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 117.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 117.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 116.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 116.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 114.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 114.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 114.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 114.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 114.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 114.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 113.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 113.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 112.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 111.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 110.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 110.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 110.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 109.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 109.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 109.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 109.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 108.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 108.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 108.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 108.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 108.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 108.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 108.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 108.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 107.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 107.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 107.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 106.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 106.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 106.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 105.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 105.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 105.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 105.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 104.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 104.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 103.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 103.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 103.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 101.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 100.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 100.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 99.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 98.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 98.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 97.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 97.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 96.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 96.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 95.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 95.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 93.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 92.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 91.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 91.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 89.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 87.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 87.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 86.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 85.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 84.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 82.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 81.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 80.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 78.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 72.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 70.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 65.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 65.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 59.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 57.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 92.9
FF:10164-103B2 76 years, female 92.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.5
Pig sample Sample description nTPM
Caudate
nTPM: 47.5
Samples: 4

Max nTPM: 56.3
Min nTPM: 41.0
Sample A Female 41.0
Sample B Female 49.5
Sample C Male 56.3
Sample D Male 43.2

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