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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:213.7 nTPM
HPA Brain:74.3 nTPM
GTEx:213.7 nTPM
FANTOM5:57.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 47.9
1981 Female, age 72, midline 94.6
2565 Male, age 75, midline 52.2
2816 Male, age 47, midline 46.2
2048 Male, age 55, midline 26.9
2194 Female, age 79, both hemispheres 19.7
Cervical spinal cord, dorsal horn
nTPM: 62.7
2297 Male, age 75, both hemispheres 116.2
2069 Male, age 47, both hemispheres 99.3
1877 Male, age 55, unknown 57.6
2296 Male, age 66, both hemispheres 45.7
2721 Male, age 90, both hemispheres 29.1
2173 Female, age 72, unknown 28.3
Cervical spinal cord, ventral horn
nTPM: 74.3
2098 Female, age 72, unknown 151.2
2809 Male, age 90, both hemispheres 112.7
2480 Male, age 75, both hemispheres 94.1
2068 Male, age 55, unknown 35.1
2295 Male, age 66, both hemispheres 34.5
2820 Female, age 79, both hemispheres 18.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 213.7
Samples: 159

Max nTPM: 752.5
Min nTPM: 57.2
Std nTPM: 121.6
Median nTPM: 176.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 752.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 649.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 598.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 551.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 533.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 524.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 513.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 508.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 455.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 426.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 416.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 399.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 391.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 384.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 384.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 375.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 365.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 365.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 354.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 349.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 346.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 335.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 331.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 324.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 323.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 312.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 306.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 305.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 302.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 300.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 291.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 289.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 286.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 284.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 284.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 283.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 280.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 275.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 270.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 270.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 267.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 262.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 260.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 259.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 256.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 250.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 245.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 245.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 244.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 242.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 240.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 236.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 236.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 235.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 233.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 220.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 219.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 216.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 216.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 210.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 210.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 209.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 208.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 206.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 203.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 200.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 199.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 193.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 192.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 190.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 187.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 185.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 183.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 183.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 183.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 181.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 181.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 179.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 177.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 176.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 176.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 175.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 174.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 173.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 172.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 171.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 171.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 171.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 168.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 166.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 162.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 161.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 160.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 160.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 160.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 158.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 156.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 153.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 152.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 150.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 148.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 148.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 147.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 144.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 142.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 139.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 139.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 139.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 138.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 137.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 137.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 137.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 136.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 133.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 132.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 130.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 128.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 127.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 127.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 126.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 126.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 125.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 125.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 120.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 120.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 118.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 117.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 115.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 114.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 112.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 111.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 106.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 106.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 105.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 102.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 101.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 100.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 100.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 100.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 98.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 90.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 90.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 86.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 85.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 85.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 81.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 80.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 79.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 79.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 73.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 67.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 57.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 57.9
FF:10181-103D1 60 years, female 79.9
FF:10159-103A6 76 years, female 35.9

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