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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:478.4 nTPM
FANTOM5:236.7 Scaled Tags Per Million
Pig:84.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036655
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 478.4
Samples: 246

Max nTPM: 1450.4
Min nTPM: 101.3
Std nTPM: 195.5
Median nTPM: 445.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1450.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1123.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1074.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1054.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1046.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1038.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 941.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 886.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 876.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 852.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 825.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 824.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 822.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 812.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 811.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 811.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 796.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 790.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 784.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 775.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 774.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 771.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 764.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 756.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 738.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 721.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 717.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 712.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 709.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 695.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 695.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 694.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 690.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 688.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 684.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 679.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 678.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 672.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 662.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 661.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 658.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 651.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 643.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 632.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 632.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 628.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 623.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 618.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 617.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 615.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 614.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 613.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 612.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 610.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 609.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 605.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 599.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 596.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 596.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 596.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 595.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 576.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 575.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 568.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 567.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 563.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 557.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 552.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 552.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 552.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 551.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 550.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 546.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 546.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 545.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 540.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 539.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 538.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 537.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 537.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 536.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 534.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 534.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 532.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 528.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 527.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 526.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 524.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 522.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 521.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 519.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 517.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 513.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 512.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 511.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 509.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 506.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 506.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 501.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 500.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 499.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 489.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 486.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 481.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 477.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 476.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 474.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 472.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 471.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 468.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 467.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 467.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 465.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 464.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 462.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 461.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 460.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 459.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 459.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 452.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 451.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 448.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 445.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 444.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 444.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 443.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 442.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 441.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 437.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 435.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 430.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 429.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 426.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 421.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 420.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 419.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 419.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 417.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 415.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 413.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 409.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 405.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 404.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 403.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 401.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 395.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 394.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 390.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 387.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 387.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 386.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 385.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 380.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 379.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 378.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 377.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 373.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 372.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 366.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 363.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 362.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 362.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 361.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 359.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 358.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 358.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 358.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 357.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 357.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 356.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 354.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 353.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 349.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 347.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 347.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 346.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 345.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 345.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 342.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 341.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 338.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 338.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 337.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 336.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 335.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 333.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 331.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 330.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 330.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 326.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 326.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 325.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 324.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 324.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 322.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 321.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 321.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 316.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 316.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 314.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 311.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 309.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 304.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 303.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 303.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 299.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 297.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 293.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 291.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 291.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 290.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 289.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 283.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 282.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 281.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 280.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 280.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 279.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 278.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 277.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 274.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 273.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 271.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 269.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 266.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 266.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 265.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 264.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 262.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 259.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 256.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 255.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 250.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 244.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 239.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 231.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 224.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 224.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 218.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 203.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 200.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 196.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 181.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 171.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 127.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 101.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 236.7
FF:10164-103B2 76 years, female 236.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.1
Pig sample Sample description nTPM
Caudate
nTPM: 84.1
Samples: 4

Max nTPM: 97.2
Min nTPM: 70.0
Sample A Female 70.0
Sample B Female 92.0
Sample C Male 97.2
Sample D Male 77.1

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