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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:77.0 nTPM
HPA Brain:68.4 nTPM
GTEx:77.0 nTPM
FANTOM5:229.2 Scaled Tags Per Million
Pig:75.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 58.5
1981 Female, age 72, midline 67.1
2194 Female, age 79, both hemispheres 62.6
2816 Male, age 47, midline 56.9
2048 Male, age 55, midline 55.0
2565 Male, age 75, midline 51.1
Cervical spinal cord, dorsal horn
nTPM: 68.4
2296 Male, age 66, both hemispheres 108.8
2173 Female, age 72, unknown 94.7
2069 Male, age 47, both hemispheres 69.6
1877 Male, age 55, unknown 54.8
2297 Male, age 75, both hemispheres 44.6
2721 Male, age 90, both hemispheres 37.7
Cervical spinal cord, ventral horn
nTPM: 63.3
2068 Male, age 55, unknown 75.1
2820 Female, age 79, both hemispheres 70.1
2098 Female, age 72, unknown 63.8
2480 Male, age 75, both hemispheres 62.6
2809 Male, age 90, both hemispheres 59.1
2295 Male, age 66, both hemispheres 49.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 77.0
Samples: 159

Max nTPM: 157.9
Min nTPM: 22.0
Std nTPM: 22.5
Median nTPM: 74.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 157.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 139.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 128.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 124.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 122.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 114.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 114.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 113.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 113.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 112.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 112.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 110.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 110.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 110.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 109.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 109.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 107.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 106.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 106.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 104.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 104.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 102.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 100.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 100.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 98.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 97.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 97.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 97.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 96.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 96.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 94.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 94.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 93.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 93.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 92.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 92.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 92.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 91.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 90.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 89.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 89.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 89.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 89.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 89.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 89.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 86.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 86.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 86.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 85.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 85.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 85.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 85.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 84.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 84.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 84.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 81.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 81.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 81.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 81.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 80.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 79.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 79.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 79.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 79.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 79.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 78.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 78.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 78.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 77.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 77.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 77.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 76.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 75.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 75.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 75.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 74.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 74.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 74.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 74.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 74.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 74.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 73.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 73.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 73.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 72.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 70.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 70.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 70.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 69.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 69.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 69.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 69.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 68.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 67.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 67.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 67.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 66.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 66.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 66.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 65.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 64.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 63.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 63.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 63.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 62.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 62.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 62.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 62.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 62.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 61.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 61.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 61.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 61.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 61.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 61.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 60.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 59.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 59.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 59.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 58.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 56.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 56.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 56.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 55.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 54.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 53.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 52.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 51.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 51.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 51.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 51.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 48.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 48.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 47.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 47.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 47.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 46.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 46.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 42.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 41.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 37.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 35.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 35.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 28.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 22.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

229.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 229.2
FF:10181-103D1 60 years, female 244.8
FF:10159-103A6 76 years, female 213.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.5
Samples: 4

Max nTPM: 94.4
Min nTPM: 64.3
Sample A Female 64.3
Sample B Female 75.5
Sample C Male 94.4
Sample D Male 67.6
Ventral spinal cord
nTPM: 65.5
Samples: 4

Max nTPM: 69.4
Min nTPM: 60.4
Sample A Female 66.3
Sample B Female 60.4
Sample C Male 65.8
Sample D Male 69.4

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