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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:253.1 nTPM
HPA Brain:141.8 nTPM
GTEx:253.1 nTPM
FANTOM5:110.8 Scaled Tags Per Million
Pig:66.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 111.0
1981 Female, age 72, midline 163.2
2816 Male, age 47, midline 110.0
2194 Female, age 79, both hemispheres 106.3
2048 Male, age 55, midline 105.1
2565 Male, age 75, midline 70.2
Cervical spinal cord, dorsal horn
nTPM: 141.8
2296 Male, age 66, both hemispheres 267.9
2173 Female, age 72, unknown 224.1
2069 Male, age 47, both hemispheres 121.5
1877 Male, age 55, unknown 117.5
2721 Male, age 90, both hemispheres 61.6
2297 Male, age 75, both hemispheres 58.1
Cervical spinal cord, ventral horn
nTPM: 124.4
2098 Female, age 72, unknown 170.2
2068 Male, age 55, unknown 145.2
2809 Male, age 90, both hemispheres 113.7
2820 Female, age 79, both hemispheres 110.5
2295 Male, age 66, both hemispheres 104.8
2480 Male, age 75, both hemispheres 101.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 253.1
Samples: 159

Max nTPM: 502.2
Min nTPM: 31.9
Std nTPM: 105.5
Median nTPM: 252.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 502.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 483.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 464.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 457.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 455.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 448.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 438.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 429.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 414.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 412.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 406.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 402.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 400.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 394.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 384.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 381.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 381.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 380.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 378.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 377.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 374.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 373.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 373.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 371.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 370.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 368.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 364.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 362.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 362.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 361.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 360.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 360.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 350.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 346.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 345.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 345.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 345.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 344.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 342.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 340.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 337.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 337.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 336.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 334.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 329.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 324.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 320.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 320.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 318.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 318.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 310.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 309.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 309.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 308.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 304.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 303.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 302.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 299.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 297.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 294.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 294.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 290.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 288.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 285.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 277.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 276.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 274.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 273.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 269.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 267.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 264.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 263.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 263.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 260.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 259.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 257.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 254.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 253.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 252.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 252.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 252.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 248.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 243.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 241.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 240.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 240.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 239.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 238.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 231.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 230.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 230.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 228.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 225.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 224.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 223.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 222.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 219.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 218.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 217.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 208.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 207.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 205.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 202.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 201.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 200.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 199.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 199.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 196.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 193.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 191.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 188.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 186.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 184.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 178.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 178.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 177.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 176.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 174.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 174.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 172.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 171.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 165.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 160.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 158.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 157.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 157.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 152.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 152.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 151.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 147.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 144.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 142.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 142.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 141.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 138.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 131.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 130.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 128.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 119.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 116.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 106.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 102.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 98.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 95.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 89.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 88.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 79.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 51.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 49.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 41.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 31.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 110.8
FF:10181-103D1 60 years, female 186.8
FF:10159-103A6 76 years, female 34.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 56.7
Samples: 4

Max nTPM: 59.0
Min nTPM: 52.3
Sample A Female 52.3
Sample B Female 58.8
Sample C Male 59.0
Sample D Male 56.6
Ventral spinal cord
nTPM: 66.2
Samples: 4

Max nTPM: 82.3
Min nTPM: 59.6
Sample A Female 59.6
Sample B Female 62.0
Sample C Male 61.0
Sample D Male 82.3

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