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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:248.5 nTPM
HPA Brain:149.8 nTPM
GTEx:248.5 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:59.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 146.7
1981 Female, age 72, midline 174.0
2194 Female, age 79, both hemispheres 173.6
2565 Male, age 75, midline 153.0
2816 Male, age 47, midline 118.0
2048 Male, age 55, midline 114.8
Cervical spinal cord, dorsal horn
nTPM: 148.5
2173 Female, age 72, unknown 186.6
2069 Male, age 47, both hemispheres 157.8
2297 Male, age 75, both hemispheres 144.3
2296 Male, age 66, both hemispheres 138.8
1877 Male, age 55, unknown 131.7
2721 Male, age 90, both hemispheres 131.5
Cervical spinal cord, ventral horn
nTPM: 149.8
2068 Male, age 55, unknown 174.7
2480 Male, age 75, both hemispheres 171.4
2295 Male, age 66, both hemispheres 150.3
2809 Male, age 90, both hemispheres 143.8
2820 Female, age 79, both hemispheres 134.3
2098 Female, age 72, unknown 124.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 248.5
Samples: 159

Max nTPM: 479.7
Min nTPM: 125.8
Std nTPM: 59.6
Median nTPM: 246.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 479.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 418.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 416.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 404.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 394.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 381.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 377.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 362.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 342.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 337.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 330.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 327.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 319.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 317.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 316.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 314.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 310.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 306.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 304.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 304.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 303.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 302.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 301.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 300.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 297.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 296.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 296.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 295.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 295.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 295.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 294.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 292.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 292.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 292.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 292.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 290.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 290.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 287.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 287.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 286.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 286.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 285.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 285.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 280.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 280.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 279.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 278.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 278.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 278.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 273.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 272.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 271.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 269.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 269.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 269.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 268.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 268.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 267.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 266.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 265.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 265.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 264.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 263.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 262.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 261.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 259.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 258.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 257.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 257.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 255.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 253.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 253.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 251.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 251.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 250.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 248.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 248.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 248.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 247.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 246.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 245.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 244.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 243.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 243.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 242.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 242.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 241.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 241.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 241.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 239.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 239.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 237.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 234.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 233.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 232.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 232.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 232.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 232.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 231.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 230.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 230.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 229.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 227.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 225.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 225.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 220.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 216.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 215.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 215.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 215.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 213.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 209.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 208.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 208.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 203.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 203.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 203.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 203.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 202.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 200.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 199.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 197.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 196.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 196.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 195.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 195.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 194.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 194.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 193.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 193.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 193.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 192.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 190.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 188.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 187.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 183.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 183.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 181.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 180.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 178.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 177.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 177.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 176.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 175.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 174.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 172.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 171.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 170.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 164.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 160.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 158.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 158.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 150.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 149.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 148.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 145.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 135.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 115.3
FF:10181-103D1 60 years, female 150.5
FF:10159-103A6 76 years, female 80.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.6
Samples: 4

Max nTPM: 51.8
Min nTPM: 49.5
Sample A Female 51.8
Sample B Female 49.5
Sample C Male 51.6
Sample D Male 49.6
Ventral spinal cord
nTPM: 59.2
Samples: 4

Max nTPM: 67.5
Min nTPM: 50.1
Sample A Female 50.1
Sample B Female 67.5
Sample C Male 62.2
Sample D Male 57.0

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