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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:87.3 nTPM
GTEx:87.3 nTPM
FANTOM5:51.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006903
Squamous epithelial cells Low


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 87.3
Samples: 156

Max nTPM: 333.9
Min nTPM: 0.4
Std nTPM: 74.9
Median nTPM: 81.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 333.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 283.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 246.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 245.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 241.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 241.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 231.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 226.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 226.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 218.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 216.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 212.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 210.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 210.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 206.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 203.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 195.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 194.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 187.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 185.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 178.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 176.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 171.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 171.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 164.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 164.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 163.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 162.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 159.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 155.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 155.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 154.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 154.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 154.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 152.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 145.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 141.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 136.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 134.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 132.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 131.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 131.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 130.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 128.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 127.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 126.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 123.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 122.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 118.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 118.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 114.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 114.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 114.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 114.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 112.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 111.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 110.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 105.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 104.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 100.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 100.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 100.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 97.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 97.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 95.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 94.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 93.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 92.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 89.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 86.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 85.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 85.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 84.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 84.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 84.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 83.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 82.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 81.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 81.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 81.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 79.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 77.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 77.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 71.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 68.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 66.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 66.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 66.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 62.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 58.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 58.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 54.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 53.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 52.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 51.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 49.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 47.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 47.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 44.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 43.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 39.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 36.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 36.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 35.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 34.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 31.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 30.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 29.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 27.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 26.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 26.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 23.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 23.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 23.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 22.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 20.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 19.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 19.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 19.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 17.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 14.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 12.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 11.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 5.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 4.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 4.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 4.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 4.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 3.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 2.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 2.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1.4
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 51.6
FF:10204-103F6 68 years, female 51.6

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