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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:113.9 nTPM
HPA:63.8 nTPM
GTEx:113.9 nTPM
FANTOM5:58.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB004041
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.8
overview
Male, age 65
Small intestine sample 232
nTPM: 45.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 69.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 67.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 72.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 113.9
Samples: 187

Max nTPM: 417.7
Min nTPM: 52.0
Std nTPM: 77.6
Median nTPM: 81.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 417.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 406.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 398.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 368.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 351.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 342.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 332.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 328.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 321.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 319.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 310.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 289.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 289.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 274.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 263.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 260.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 238.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 234.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 228.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 218.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 216.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 216.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 211.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 191.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 190.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 186.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 185.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 179.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 175.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 172.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 171.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 152.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 151.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 149.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 149.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 142.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 140.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 140.6
GTEX-1192X-2526-SM-59868 50-59 years, male 139.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 134.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 133.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 131.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 130.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 129.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 122.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 119.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 118.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 118.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 116.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 114.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 111.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 110.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 107.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 105.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 104.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 103.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 102.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 98.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 98.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 97.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 97.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 96.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 94.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 93.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 93.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 93.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 93.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 93.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 90.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 90.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 89.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 88.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 88.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 87.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 87.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 87.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 87.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 87.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 86.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 86.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 86.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 86.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 85.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 85.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 84.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 84.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 84.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 83.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 83.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 83.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 83.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 83.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 83.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 81.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 80.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 80.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 79.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 79.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 79.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 79.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 79.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 79.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 79.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 78.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 78.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 78.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 77.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 77.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 77.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 76.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 76.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 76.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 76.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 76.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 75.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 75.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 75.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 74.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 74.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 74.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 74.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 74.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 74.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 74.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 73.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 73.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 73.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 73.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 72.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 72.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 72.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 72.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 72.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 72.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 72.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 71.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 71.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 71.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 70.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 70.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 70.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 70.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 70.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 69.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 69.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 69.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 69.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 69.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 69.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 68.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 68.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 67.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 67.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 67.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 66.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 66.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 65.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 65.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 65.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 64.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 64.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 63.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 63.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 63.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 63.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 63.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 63.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 63.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 62.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 61.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 61.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 61.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 61.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 59.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 59.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 59.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 59.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 58.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 58.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 57.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 57.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 56.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 55.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 54.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 54.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 54.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 52.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 58.7
FF:10024-101D6 15,40,85 years, mixed 58.7

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