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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:115.8 nTPM
HPA Brain:48.3 nTPM
GTEx:115.8 nTPM
FANTOM5:98.2 Scaled Tags Per Million
Pig:144.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 48.3
2565 Male, age 75, midline 59.2
2048 Male, age 55, midline 51.2
1981 Female, age 72, midline 51.1
2816 Male, age 47, midline 44.1
2194 Female, age 79, both hemispheres 36.0
Cervical spinal cord, dorsal horn
nTPM: 46.6
2721 Male, age 90, both hemispheres 53.6
2069 Male, age 47, both hemispheres 51.2
2296 Male, age 66, both hemispheres 47.0
2297 Male, age 75, both hemispheres 44.2
2173 Female, age 72, unknown 43.2
1877 Male, age 55, unknown 40.3
Cervical spinal cord, ventral horn
nTPM: 45.6
2480 Male, age 75, both hemispheres 58.0
2295 Male, age 66, both hemispheres 50.3
2809 Male, age 90, both hemispheres 47.9
2820 Female, age 79, both hemispheres 40.5
2098 Female, age 72, unknown 39.1
2068 Male, age 55, unknown 38.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 115.8
Samples: 159

Max nTPM: 293.6
Min nTPM: 47.7
Std nTPM: 36.6
Median nTPM: 111.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 293.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 208.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 206.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 195.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 191.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 189.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 189.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 182.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 182.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 181.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 180.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 173.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 173.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 170.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 168.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 167.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 167.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 165.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 164.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 163.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 156.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 154.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 153.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 150.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 149.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 149.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 145.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 144.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 143.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 142.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 141.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 140.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 140.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 138.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 137.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 137.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 136.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 136.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 136.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 136.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 134.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 133.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 132.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 132.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 131.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 131.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 128.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 128.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 127.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 127.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 127.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 126.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 125.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 121.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 120.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 119.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 119.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 119.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 118.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 118.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 118.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 117.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 117.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 116.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 116.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 116.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 116.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 116.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 116.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 115.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 115.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 115.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 114.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 113.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 113.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 112.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 111.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 111.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 110.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 110.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 109.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 108.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 107.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 106.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 105.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 104.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 103.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 103.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 102.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 102.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 102.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 101.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 100.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 99.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 99.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 99.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 99.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 98.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 98.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 97.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 97.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 97.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 96.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 96.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 96.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 95.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 95.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 95.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 95.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 93.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 92.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 92.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 91.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 91.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 90.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 90.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 90.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 89.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 89.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 87.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 86.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 85.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 84.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 83.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 81.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 80.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 79.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 79.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 79.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 79.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 78.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 78.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 78.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 76.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 75.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 74.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 74.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 73.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 72.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 72.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 70.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 70.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 65.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 64.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 63.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 61.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 56.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

98.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 98.2
FF:10181-103D1 60 years, female 122.8
FF:10159-103A6 76 years, female 73.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 112.9
Samples: 4

Max nTPM: 130.6
Min nTPM: 103.2
Sample A Female 105.1
Sample B Female 103.2
Sample C Male 130.6
Sample D Male 112.6
Ventral spinal cord
nTPM: 144.6
Samples: 4

Max nTPM: 159.8
Min nTPM: 132.3
Sample A Female 132.3
Sample B Female 151.9
Sample C Male 159.8
Sample D Male 134.3

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