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  • CRABP1
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Medium
Inner plexiform layer: Medium
Limiting membrane: Not detected
Nerve fiber layer: High
Outer plexiform layer: Medium
Photoreceptor cells: Not detected
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:527.4 nTPM
GTEx:527.4 nTPM
FANTOM5:277.9 Scaled Tags Per Million
Pig:141.4 nTPM
Mouse:26.1 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA017203
Pigment epithelial cells Not detected
Photoreceptor cells Not detected
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Medium
Inner plexiform layer Medium
Ganglion cells Not detected
Nerve fiber layer High

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

527.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 527.4
Samples: 105

Max nTPM: 1112.0
Min nTPM: 88.5
Std nTPM: 203.5
Median nTPM:
452_1 88 years, female 1112.0
173_1 67 years, male 964.8
351_1 91 years, male 946.1
384_1 83 years, male 933.2
379_1 60 years, male 919.5
218_1 71 years, female 892.4
506_1 65 years, male 890.1
322_1 76 years, male 888.1
295_1 61 years, female 847.0
163_1 78 years, male 793.0
377_1 82 years, female 791.9
376_1 75 years, female 786.4
386_1 76 years, male 778.6
17_1 71 years, male 766.2
137_1 83 years, male 762.4
177_1 74 years, male 728.9
189_1 76 years, male 724.6
353_1 82 years, female 720.3
4_1 88 years, female 697.2
317_1 60 years, male 695.9
319_1 81 years, male 671.1
145_1 84 years, male 666.2
41_1 94 years, female 660.1
243_1 75 years, male 654.2
264_1 73 years, female 651.9
356_1 87 years, female 642.4
447_1 81 years, male 634.2
406_1 79 years, male 625.6
394_1 75 years, female 623.5
120_1 70 years, female 618.0
321_1 62 years, female 617.1
349_1 83 years, male 615.5
316_1 62 years, male 614.7
503_1 68 years, male 604.1
389_1 86 years, female 602.0
354_1 81 years, female 591.3
314_1 67 years, male 587.8
350_1 84 years, female 582.0
251_1 78 years, male 578.8
518_1 75 years, female 575.9
292_1 71 years, male 572.9
347_1 72 years, male 570.1
35_1 74 years, female 545.4
18_1 88 years, male 544.9
320_1 89 years, female 544.4
404_1 82 years, female 543.9
318_1 68 years, male 543.3
315_1 62 years, female 538.6
348_1 84 years, male 533.1
375_1 74 years, female 531.8
352_1 62 years, male 528.3
237_1 82 years, male 528.0
291_1 76 years, male 527.8
405_1 91 years, male 519.0
293_1 68 years, female 516.4
308_1 70 years, female 510.6
246_1 77 years, male 510.2
288_1 66 years, female 506.3
139_1 64 years, female 502.3
311_1 78 years, male 493.0
526_1 61 years, male 491.6
501_1 88 years, male 490.7
335_1 73 years, female 485.9
6_1 73 years, female 483.3
307_1 66 years, female 483.2
115_1 83 years, male 482.5
109_1 81 years, female 480.7
425_1 59 years, female 478.9
480_1 63 years, male 464.8
172_1 72 years, female 462.7
517_1 88 years, male 460.5
99_1 64 years, male 449.4
126_1 63 years, male 447.8
396_1 62 years, male 438.4
265_1 87 years, male 435.3
286_1 68 years, female 433.0
2_1 77 years, female 429.8
266_1 85 years, male 420.5
468_1 89 years, male 414.3
42_1 85 years, male 402.2
153_1 70 years, female 393.6
254_1 77 years, female 392.9
355_1 70 years, female 387.6
495_1 57 years, female 370.4
499_1 55 years, female 367.5
217_1 76 years, male 324.7
119_1 70 years, female 323.6
142_1 61 years, female 321.8
229_1 69 years, female 310.9
324_1 76 years, male 306.9
117_1 61 years, male 306.2
313_1 79 years, female 304.9
9_1 66 years, female 278.2
81_1 67 years, male 263.0
89_1 63 years, male 259.6
414_1 84 years, female 241.8
43_1 64 years, female 228.0
415_1 77 years, female 209.3
162_1 79 years, female 208.1
32_1 67 years, male 174.6
466_1 57 years, female 153.2
149_1 88 years, male 135.6
413_1 59 years, female 117.7
491_1 89 years, female 109.1
490_1 67 years, female 88.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

277.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 277.9
FF:10030-101E3 24-65 years, mixed 277.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.4
Pig sample Sample description nTPM
Retina
nTPM: 141.4
Samples: 4

Max nTPM: 164.6
Min nTPM: 115.4
Sample A Female 115.4
Sample B Female 153.2
Sample C Male 164.6
Sample D Male 132.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.1
Mouse sample Sample description nTPM
Retina
nTPM: 26.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 19.3
Sample A Male 22.1
Sample B Male 24.8
Sample C Female 38.4
Sample D Female 19.3

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