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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:198.6 nTPM
GTEx:198.6 nTPM
FANTOM5:0.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038847Antibody HPA038848
Squamous epithelial cells HighHigh





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 198.6
Samples: 156

Max nTPM: 1100.0
Min nTPM: 0.0
Std nTPM: 225.1
Median nTPM: 126.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1100.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 875.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 760.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 748.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 709.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 705.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 700.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 696.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 664.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 614.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 562.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 537.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 527.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 522.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 511.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 502.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 495.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 483.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 482.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 481.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 480.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 479.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 474.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 468.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 466.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 461.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 448.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 448.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 432.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 411.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 411.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 406.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 402.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 400.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 396.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 390.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 381.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 347.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 346.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 330.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 322.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 321.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 316.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 299.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 298.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 292.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 287.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 278.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 267.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 261.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 254.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 251.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 224.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 222.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 211.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 208.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 204.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 202.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 197.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 197.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 196.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 188.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 188.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 187.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 175.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 172.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 168.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 168.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 167.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 167.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 157.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 153.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 141.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 136.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 136.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 135.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 134.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 128.3
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 125.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 121.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 120.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 118.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 109.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 106.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 88.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 86.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 85.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 82.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 81.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 70.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 70.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 68.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 57.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 56.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 52.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 51.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 50.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 39.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 35.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 30.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 29.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 24.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 18.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 11.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 10.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 7.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 7.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 7.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 6.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 6.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 5.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 5.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 4.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 4.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 4.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 3.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 0.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 0.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 0.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 0.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 0.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 0.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 0.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 0.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 0.0
FF:10204-103F6 68 years, female 0.0

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