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SEC11C
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:178.5 nTPM
HPA Brain:94.5 nTPM
GTEx:178.5 nTPM
FANTOM5:307.4 Scaled Tags Per Million
Pig:149.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 84.5
1981 Female, age 72, midline 115.8
2048 Male, age 55, midline 107.3
2816 Male, age 47, midline 72.5
2565 Male, age 75, midline 68.0
2194 Female, age 79, both hemispheres 59.2
Cervical spinal cord, dorsal horn
nTPM: 94.5
2296 Male, age 66, both hemispheres 132.5
2173 Female, age 72, unknown 128.0
2069 Male, age 47, both hemispheres 104.1
1877 Male, age 55, unknown 78.2
2721 Male, age 90, both hemispheres 73.9
2297 Male, age 75, both hemispheres 50.1
Cervical spinal cord, ventral horn
nTPM: 79.6
2098 Female, age 72, unknown 136.6
2480 Male, age 75, both hemispheres 76.1
2295 Male, age 66, both hemispheres 74.7
2068 Male, age 55, unknown 71.1
2809 Male, age 90, both hemispheres 70.0
2820 Female, age 79, both hemispheres 48.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 178.5
Samples: 159

Max nTPM: 311.8
Min nTPM: 76.8
Std nTPM: 48.1
Median nTPM: 177.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 311.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 306.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 282.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 282.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 275.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 270.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 267.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 267.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 264.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 262.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 251.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 248.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 244.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 244.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 240.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 238.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 237.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 237.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 233.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 230.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 229.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 228.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 224.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 223.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 223.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 222.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 220.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 219.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 219.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 218.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 218.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 216.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 215.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 214.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 214.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 214.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 214.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 213.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 213.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 210.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 207.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 207.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 206.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 206.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 205.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 204.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 203.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 202.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 202.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 201.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 201.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 201.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 201.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 201.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 199.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 199.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 198.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 198.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 198.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 197.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 196.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 194.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 194.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 193.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 192.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 189.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 189.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 187.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 186.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 186.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 185.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 181.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 180.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 180.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 179.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 178.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 178.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 177.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 177.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 175.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 175.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 172.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 172.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 172.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 171.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 170.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 170.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 169.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 169.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 168.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 168.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 167.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 165.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 164.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 163.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 163.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 163.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 163.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 163.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 163.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 163.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 162.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 158.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 156.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 156.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 155.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 155.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 155.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 155.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 154.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 154.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 154.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 153.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 153.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 152.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 142.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 141.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 140.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 140.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 140.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 138.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 138.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 133.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 132.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 128.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 124.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 123.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 118.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 116.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 116.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 115.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 113.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 113.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 113.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 111.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 108.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 107.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 104.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 104.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 97.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 96.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 95.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 94.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 93.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 92.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 92.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 91.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 84.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 76.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

307.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 307.4
FF:10159-103A6 76 years, female 314.8
FF:10181-103D1 60 years, female 300.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 126.8
Samples: 4

Max nTPM: 152.7
Min nTPM: 108.2
Sample A Female 108.2
Sample B Female 119.0
Sample C Male 152.7
Sample D Male 127.4
Ventral spinal cord
nTPM: 149.9
Samples: 4

Max nTPM: 178.3
Min nTPM: 127.4
Sample A Female 137.6
Sample B Female 127.4
Sample C Male 156.4
Sample D Male 178.3

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