HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:141.3 nTPM
HPA Brain:77.0 nTPM
GTEx:141.3 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Pig:68.4 nTPM
Mouse:20.0 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041501Antibody HPA041736
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 77.0
Sample id Sample description nTPM
Hippocampus
nTPM: 73.6
1898 Male, age 80, left hemisphere 83.4
2529 Female, age 94, left hemisphere 79.8
1855 Male, age 76, left hemisphere 76.1
2148 Female, age 91, left hemisphere 68.1
1911 Female, age 85, right hemisphere 67.3
2621 Female, age 67, right hemisphere 67.1
Dentate gyrus
nTPM: 76.2
2530 Female, age 94, left hemisphere 91.8
2010 Male, age 76, both hemispheres 83.3
2528 Male, age 74, both hemispheres 77.2
2246 Female, age 85, both hemispheres 73.5
1927 Female, age 91, both hemispheres 71.4
2531 Female, age 67, both hemispheres 59.7
Entorhinal gyrus
nTPM: 64.8
2764 Male, age 80, right hemisphere 73.4
2117 Female, age 91, right hemisphere 71.5
1787 Male, age 76, left hemisphere 69.6
1938 Female, age 85, left hemisphere 65.4
2613 Female, age 94, left hemisphere 56.5
2686 Male, age 75, right hemisphere 52.6
Hippocampus, CA1
nTPM: 77.0
2749 Male, age 80, left hemisphere 93.4
2527 Male, age 74, both hemispheres 79.1
2045 Male, age 76, both hemispheres 75.7
1873 Female, age 85, both hemispheres 74.7
2082 Female, age 91, right hemisphere 62.0
Hippocampus, CA2
nTPM: 72.9
1963 Male, age 80, left hemisphere 90.2
2249 Male, age 74, both hemispheres 81.1
1892 Male, age 76, both hemispheres 71.1
2437 Female, age 94, left hemisphere 67.9
1940 Female, age 85, left hemisphere 64.2
2113 Female, age 91, right hemisphere 62.7
Hippocampus, CA3
nTPM: 72.5
2620 Female, age 94, left hemisphere 80.1
2137 Male, age 80, left hemisphere 78.3
2436 Male, age 74, both hemispheres 76.5
1867 Male, age 76, both hemispheres 74.1
1891 Female, age 85, both hemispheres 71.4
2861 Female, age 67, both hemispheres 54.3
Parahippocampal cortex
nTPM: 61.4
2245 Female, age 91, both hemispheres 68.0
2018 Male, age 76, both hemispheres 67.7
2532 Female, age 72, left hemisphere 67.4
1850 Male, age 80, both hemispheres 67.3
1933 Female, age 85, both hemispheres 67.0
1990 Female, age 91, right hemisphere 63.8
2250 Female, age 67, right hemisphere 57.7
2692 Male, age 74, both hemispheres 56.7
2693 Female, age 94, both hemispheres 51.1
2622 Female, age 67, right hemisphere 47.5
Perirhinal gyrus
nTPM: 62.5
1794 Male, age 80, right hemisphere 70.2
1847 Female, age 91, left hemisphere 65.8
2521 Female, age 94, right hemisphere 62.2
1841 Female, age 85, right hemisphere 60.6
2848 Male, age 76, right hemisphere 53.8
Subiculum
nTPM: 69.1
1901 Male, age 80, both hemispheres 82.4
1977 Female, age 85, both hemispheres 73.3
2042 Male, age 76, both hemispheres 69.7
2438 Female, age 94, left hemisphere 64.9
2619 Male, age 74, both hemispheres 63.0
2729 Female, age 91, right hemisphere 61.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 141.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 141.3
Samples: 197

Max nTPM: 266.0
Min nTPM: 67.1
Std nTPM: 30.5
Median nTPM: 138.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 266.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 263.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 243.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 225.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 223.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 219.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 216.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 210.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 203.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 203.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 192.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.6
FF:10169-103B7 60 years, female 94.5
FF:10153-102I9 76 years, female 74.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 68.4
Pig sample Sample description nTPM
Subiculum
nTPM: 50.0
Samples: 4

Max nTPM: 64.4
Min nTPM: 42.5
Sample A Female 64.4
Sample B Female 47.6
Sample C Male 42.5
Sample D Male 45.6
Dorsal hippocampus
nTPM: 68.4
Samples: 4

Max nTPM: 86.7
Min nTPM: 56.4
Sample A Female 86.7
Sample B Female 69.9
Sample C Male 56.4
Sample D Male 60.7
Entorhinal cortex
nTPM: 53.1
Samples: 4

Max nTPM: 62.8
Min nTPM: 43.4
Sample A Female 53.4
Sample B Female 62.8
Sample C Male 52.7
Sample D Male 43.4
Ventral hippocampus
nTPM: 59.7
Samples: 4

Max nTPM: 68.6
Min nTPM: 51.8
Sample A Female 55.2
Sample B Female 51.8
Sample C Male 63.1
Sample D Male 68.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 20.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.6
Samples: 4

Max nTPM: 20.7
Min nTPM: 18.3
Sample A Male 19.0
Sample B Male 20.7
Sample C Female 20.2
Sample D Female 18.3
Hippocampal formation
nTPM: 20.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 17.0
Sample A Male 23.9
Sample B Male 17.0
Sample C Female 19.2
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69838600 Antisense, RP_050310_02_B08, Mouse strain C57BL/6J (56 days, male) 3.1
74819685 Antisense, RP_060315_02_H01, Mouse strain C57BL/6J (56 days, male) 0.2

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