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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:128.3 nTPM
FANTOM5:74.8 Scaled Tags Per Million
Pig:69.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041501Antibody HPA041736
Glial cells LowLow
Neuronal cells MediumHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 128.3
Samples: 246

Max nTPM: 252.1
Min nTPM: 62.5
Std nTPM: 29.4
Median nTPM: 126.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 252.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 249.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 236.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 228.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 222.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 218.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 203.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 195.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 185.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 180.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 178.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 177.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 174.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 173.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 172.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 172.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 171.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 170.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 170.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 169.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 164.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 164.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 161.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 159.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 157.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 157.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 157.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 156.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 155.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 155.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 154.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 154.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 153.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 153.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 153.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 152.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 152.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 151.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 149.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 148.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 147.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 147.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 147.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 146.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 146.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 146.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 145.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 145.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 143.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 142.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 142.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 142.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 142.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 142.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 141.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 141.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 141.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 141.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 141.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 141.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 141.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 141.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 140.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 140.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 140.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 140.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 140.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 140.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 140.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 139.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 139.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 139.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 139.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 139.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 138.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 138.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 137.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 135.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 135.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 135.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 135.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 135.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 135.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 135.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 135.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 134.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 134.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 134.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 134.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 134.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 134.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 134.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 133.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 133.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 132.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 131.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 131.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 131.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 131.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 131.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 130.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 129.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 129.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 129.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 128.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 128.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 128.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 127.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 127.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 127.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 127.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 126.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 126.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 126.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 126.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 126.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 125.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 125.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 125.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 124.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 123.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 123.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 123.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 122.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 122.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 122.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 122.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 122.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 121.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 121.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 121.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 121.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 120.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 120.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 120.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 119.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 119.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 119.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 119.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 119.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 118.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 118.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 118.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 118.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 118.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 118.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 117.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 117.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 117.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 117.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 117.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 117.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 115.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 115.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 115.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 115.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 114.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 113.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 113.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 113.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 112.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 112.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 112.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 111.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 110.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 110.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 110.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 110.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 109.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 109.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 109.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 109.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 109.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 108.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 108.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 108.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 108.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 107.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 107.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 107.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 107.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 107.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 106.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 106.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 105.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 105.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 105.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 105.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 104.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 104.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 103.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 103.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 103.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 103.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 103.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 102.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 102.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 102.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 102.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 102.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 102.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 101.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 101.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 101.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 101.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 101.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 101.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 100.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 99.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 98.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 98.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 95.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 94.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 93.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 93.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 92.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 90.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 89.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 89.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 89.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 88.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 88.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 87.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 84.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 82.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 70.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 69.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 68.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 67.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 66.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 62.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 74.8
FF:10164-103B2 76 years, female 74.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.6
Pig sample Sample description nTPM
Caudate
nTPM: 69.6
Samples: 4

Max nTPM: 76.0
Min nTPM: 62.9
Sample A Female 62.9
Sample B Female 74.9
Sample C Male 76.0
Sample D Male 64.6

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